{"id":"W4318169184","doi":"10.1128/msphere.00034-23","title":"Virology under the Microscope—a Call for Rational Discourse","year":2023,"lang":"en","type":"article","venue":"mSphere","topic":"Viral gastroenteritis research and epidemiology","field":"Medicine","cited_by":10,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of Toronto; Western University; Queen's University","funders":"National Institute of Dental and Craniofacial Research; National Institute of Allergy and Infectious Diseases; National Institute of General Medical Sciences; Biotechnology and Biological Sciences Research Council; Medical Research Council; Canadian Institutes of Health Research; Plant Sciences Institute, Iowa State University; Advanced Research Projects Agency; Defense Advanced Research Projects Agency; Natural Sciences and Engineering Research Council of Canada; Pfizer; Moderna; Centers for Disease Control and Prevention; Zoetis; Novavax; Iowa State University; GlaxoSmithKline; Directorate for Biological Sciences; National Institutes of Health; Associazione Italiana per la Ricerca sul Cancro; U.S. Department of Defense; Eli Lilly and Company; Fast Grants; United States Agency for International Development; Biomedical Advanced Research and Development Authority; Ohio State University; Deutsche Forschungsgemeinschaft; National Science Foundation; UK Research and Innovation; AstraZeneca; Bill and Melinda Gates Foundation; Coalition for Epidemic Preparedness Innovations; National Cancer Institute; Gilead Sciences; U.S. Department of Agriculture","keywords":"Immunosuppression; Humanity; Virology; Coronavirus disease 2019 (COVID-19); Severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2); Disease; Medicine; 2019-20 coronavirus outbreak; Immunology; Infectious disease (medical specialty); Pathology; Political science","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0002634128,0.00006484771,0.0001473474,0.00001702177,0.0000980564,0.00000834539,0.00008441247,0.00005362356,0.0003673791],"category_scores_gemma":[0.0001643677,0.00003934828,0.00007544037,0.00007682289,0.0001686509,0.00002304459,0.00004480899,0.0001276091,0.000305595],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00002321756,"about_ca_system_score_gemma":0.00006178323,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00003580663,"about_ca_topic_score_gemma":0.0002570852,"domain_scores_codex":[0.9992264,0.00006706108,0.0001281564,0.000147722,0.00008288391,0.0003477739],"domain_scores_gemma":[0.999644,0.00006821352,0.00002037847,0.0001491426,0.00003810409,0.00008016796],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"not_applicable","study_design_gemma":"observational","study_design_scores_codex":[0.0005722405,0.00005544264,0.01528852,0.00004187834,0.00008502355,0.00003301199,0.00005676615,0.0001594184,0.0442309,0.002554212,0.9334756,0.003447025],"study_design_scores_gemma":[0.005816897,0.002438995,0.5509642,0.00007140696,0.00007884,0.0002427633,0.001715607,0.006682817,0.0006704255,0.007443218,0.4236616,0.0002132084],"study_design_candidate":"not_applicable","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.8566527,0.0001969014,0.004574485,0.13641,0.0002353616,0.0005358455,0.00006314587,0.00006753134,0.001264015],"genre_scores_gemma":[0.974487,0.00006220689,0.000695242,0.0058728,0.0003898977,0.0001577094,0.0002023802,0.0000172129,0.01811554],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.5356757,"threshold_uncertainty_score":0.4022544,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.04673157807881114,"score_gpt":0.392803552148544,"score_spread":0.3460719740697328,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}