{"id":"W4318620560","doi":"10.1128/spectrum.03616-22","title":"Week-Old Chicks with High <i>Bacteroides</i> Abundance Have Increased Short-Chain Fatty Acids and Reduced Markers of Gut Inflammation","year":2023,"lang":"en","type":"article","venue":"Microbiology Spectrum","topic":"Gut microbiota and health","field":"Biochemistry, Genetics and Molecular Biology","cited_by":65,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of Alberta","funders":"Alberta Livestock and Meat Agency","keywords":"Bacteroides; Biology; Context (archaeology); Gut flora; Microbiome; Gut microbiome; Abundance (ecology); Host (biology); Inflammation; Bacteroidaceae; Microbiology; Immunology; Bacteria; Ecology; Genetics","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0003437173,0.0002655988,0.0003428086,0.0001084894,0.0001222544,0.00001638741,0.0001869126,0.0003298689,0.00002843958],"category_scores_gemma":[0.00002907884,0.000237627,0.00006274354,0.0001693531,0.0003361188,0.000007106788,0.0001403273,0.0001885861,0.00001219645],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00003000562,"about_ca_system_score_gemma":0.0001065526,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0002159359,"about_ca_topic_score_gemma":0.0006275038,"domain_scores_codex":[0.9983938,0.0001299359,0.000396748,0.0005508052,0.00004310567,0.0004856141],"domain_scores_gemma":[0.9992469,0.00002407893,0.0001688162,0.0004121929,0.00005204018,0.00009596992],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.000526565,0.0000300126,0.02654236,0.00006037102,0.00008903124,0.000006866796,0.00006741378,0.000008899541,0.9712501,0.00005899224,0.00117223,0.0001872156],"study_design_scores_gemma":[0.0009487991,0.0008923407,0.1811567,0.00004646504,0.00002982522,0.0001217492,0.0001016301,0.00001142049,0.8126853,0.00005136196,0.003674118,0.0002803182],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9978403,0.0001772391,0.00008268104,0.001025559,0.0001252307,0.0003613983,0.000165917,0.00004344961,0.0001782003],"genre_scores_gemma":[0.9969621,0.0003640486,0.0004822378,0.0002701388,0.0001445765,0.00001849645,0.001307704,0.00003573568,0.0004149996],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.1585648,"threshold_uncertainty_score":0.9690148,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.006382053270905676,"score_gpt":0.2171467197437111,"score_spread":0.2107646664728054,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}