{"id":"W4318620560","doi":"10.1128/spectrum.03616-22","title":"Week-Old Chicks with High <i>Bacteroides</i> Abundance Have Increased Short-Chain Fatty Acids and Reduced Markers of Gut Inflammation","year":2023,"lang":"en","type":"article","venue":"Microbiology Spectrum","topic":"Gut microbiota and health","field":"Biochemistry, Genetics and Molecular Biology","cited_by":65,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of Alberta","funders":"Alberta Livestock and Meat Agency","keywords":"Bacteroides; Biology; Context (archaeology); Gut flora; Microbiome; Gut microbiome; Abundance (ecology); Host (biology); Inflammation; Bacteroidaceae; Microbiology; Immunology; Bacteria; Ecology; Genetics","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001203071,0.0003691296,0.0004294387,0.0003582918,0.0003905195,0.0006270153,0.0001380238,0.0004360797,0.002262898],"category_scores_gemma":[0.0001556635,0.0003143732,0.0002762516,0.00011812,0.0003450411,0.0003393754,0.0002267773,0.000799882,0.0007335316],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0004139255,"about_ca_system_score_gemma":0.0002628844,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.004231242,"about_ca_topic_score_gemma":0.00829743,"domain_scores_codex":[0.9998593,0.00001098017,0.000009694474,0.00006493815,0.00001739768,0.00003761448],"domain_scores_gemma":[0.9996649,0.0000201403,0.0001002081,0.00001795975,0.00005027474,0.0001464729],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.0006826945,0.00005175893,0.006852555,0.00004286127,0.00002257371,0.00004826114,0.00006987672,0.00001896451,0.9906192,0.00003330262,0.0001007855,0.001457172],"study_design_scores_gemma":[0.00004324349,0.001408818,0.6961595,0.00005335134,0.000144237,0.0005643628,0.00127808,0.0003487406,0.2950082,0.0001540258,0.004788032,0.00004939099],"study_design_candidate":"observational","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.99636,0.0005998765,0.001127125,0.00009465661,0.00004917914,0.00001577284,0.000716685,0.00004176184,0.0009950205],"genre_scores_gemma":[0.9928576,0.0002904538,0.001451177,0.0001965256,0.0000107246,0.00003681291,0.0007481067,0.00005686372,0.004351709],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.004231242,"threshold_uncertainty_score":0.008413255,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.006382053270905676,"score_gpt":0.2171467197437111,"score_spread":0.2107646664728054,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}