{"id":"W4318823547","doi":"10.1094/phytofr-09-22-0095-fi","title":"SODplex, a Series of Hierarchical Multiplexed Real-Time PCR Assays for the Detection and Lineage Identification of <i>Phytophthora ramorum</i>, the Causal Agent of Sudden Oak Death and Sudden Larch Death","year":2023,"lang":"en","type":"article","venue":"PhytoFrontiers™","topic":"Plant Pathogens and Resistance","field":"Agricultural and Biological Sciences","cited_by":4,"is_retracted":false,"has_abstract":true,"ca_institutions":"Natural Resources Canada; Canadian Forest Service; Canadian Food Inspection Agency; University of British Columbia","funders":"Genome Canada","keywords":"Phytophthora ramorum; Biology; Identification (biology); False positive paradox; Phytophthora; Computer science; Artificial intelligence; Ecology; Botany","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":true,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.002952791,0.002428601,0.001396539,0.002751079,0.000561116,0.001315546,0.001728279,0.001296282,0.00231571],"category_scores_gemma":[0.003088024,0.001401495,0.001212557,0.001071563,0.001012937,0.00120296,0.001578865,0.001927467,0.001749101],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0008321021,"about_ca_system_score_gemma":0.001225812,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0009623996,"about_ca_topic_score_gemma":0.003430006,"domain_scores_codex":[0.99455,0.001098971,0.000335257,0.001852894,0.001805744,0.0003569805],"domain_scores_gemma":[0.9982505,0.0005541429,0.0005135596,0.0001311586,0.0003679792,0.0001825359],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.000757232,0.0003620557,0.008365612,0.0007483915,0.0001300064,0.0001406845,0.0003985595,0.001568348,0.9198463,0.001269069,0.003861957,0.06255177],"study_design_scores_gemma":[0.0001950036,0.001359402,0.01462912,0.0002232024,0.0002211822,0.0006481666,0.0002325684,0.03555739,0.9036274,0.001172582,0.04192365,0.0002104257],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"methods","genre_gemma":"methods","genre_scores_codex":[0.2147567,0.00529864,0.7378795,0.0004228163,0.0008620552,0.004896612,0.01113329,0.01140425,0.01334606],"genre_scores_gemma":[0.1805671,0.002523451,0.7787319,0.0008943578,0.0001597511,0.00580268,0.01431027,0.0006210006,0.0163895],"genre_candidate":"methods","genre_consensus":"methods","teacher_disagreement_score":0.002952791,"threshold_uncertainty_score":0.015616,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.02745501042827267,"score_gpt":0.240501806907933,"score_spread":0.2130467964796603,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}