{"id":"W4318823547","doi":"10.1094/phytofr-09-22-0095-fi","title":"SODplex, a Series of Hierarchical Multiplexed Real-Time PCR Assays for the Detection and Lineage Identification of <i>Phytophthora ramorum</i>, the Causal Agent of Sudden Oak Death and Sudden Larch Death","year":2023,"lang":"en","type":"article","venue":"PhytoFrontiers™","topic":"Plant Pathogens and Resistance","field":"Agricultural and Biological Sciences","cited_by":4,"is_retracted":false,"has_abstract":true,"ca_institutions":"Natural Resources Canada; Canadian Forest Service; Canadian Food Inspection Agency; University of British Columbia","funders":"Genome Canada","keywords":"Phytophthora ramorum; Biology; Identification (biology); False positive paradox; Phytophthora; Computer science; Artificial intelligence; Ecology; Botany","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":true,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0007797843,0.0001227056,0.0002630716,0.00002339431,0.0002510685,0.00002909452,0.0001877257,0.00008077559,0.000004899861],"category_scores_gemma":[0.0001203254,0.00004493297,0.00009526013,0.0002587104,0.0002154623,0.00008042731,0.00008356821,0.00008446998,6.874809e-7],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.000007975875,"about_ca_system_score_gemma":0.00001021256,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0001810253,"about_ca_topic_score_gemma":0.0002583294,"domain_scores_codex":[0.9988592,0.0001276021,0.0003496982,0.0002395338,0.0002142064,0.0002097388],"domain_scores_gemma":[0.9989613,0.0005445885,0.000240266,0.0001081787,0.0001010874,0.00004459242],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.0002455051,0.00003017531,0.005217036,0.00005845436,0.00004212747,0.000001174147,0.000100757,0.000009493481,0.9870135,0.0001355115,0.0002140683,0.006932165],"study_design_scores_gemma":[0.000233515,0.0002318943,0.8674541,0.00003380486,0.00007419477,0.0000083915,0.0007204942,0.003274878,0.1258267,0.0005940935,0.001429597,0.0001183187],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9973201,0.0006305309,0.0001180665,0.0005326264,0.0001006094,0.0005296214,0.0006937088,0.00002435541,0.00005034285],"genre_scores_gemma":[0.9978499,0.001236817,0.0002429347,0.00000952799,0.00009795818,0.00005028203,0.00006556651,0.000002473457,0.0004445242],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.8622371,"threshold_uncertainty_score":0.1931041,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.02745501042827267,"score_gpt":0.240501806907933,"score_spread":0.2130467964796603,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}