{"id":"W4318833926","doi":"10.3390/genes14020377","title":"Dynamic Evolution of NLR Genes in Dalbergioids","year":2023,"lang":"en","type":"article","venue":"Genes","topic":"Genomics and Phylogenetic Studies","field":"Biochemistry, Genetics and Molecular Biology","cited_by":7,"is_retracted":false,"has_abstract":true,"ca_institutions":"The Metabolomics Innovation Centre; University of Alberta","funders":"King Saud University","keywords":"Biology; Clade; Evolutionary biology; Phylogenetic tree; Gene duplication; Tandem exon duplication; Genome; Phylogenetics; Segmental duplication; Gene family; Gene; Genetics","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001042011,0.00008615206,0.0001087159,0.00007231811,0.00002935896,0.000003163691,0.0001087093,0.00006791091,0.000003920785],"category_scores_gemma":[0.00001523279,0.0000853874,0.00005200973,0.0001705005,0.00004715279,3.352469e-7,0.0001164301,0.00002016099,0.00001378694],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00001157407,"about_ca_system_score_gemma":0.00003750065,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0000871955,"about_ca_topic_score_gemma":0.0003623013,"domain_scores_codex":[0.9994065,0.00002119981,0.0001543294,0.0001915445,0.0000596555,0.0001668269],"domain_scores_gemma":[0.9996995,0.000007207166,0.00003962576,0.000196998,0.00003567443,0.0000209545],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.0000159946,0.00001382338,0.04356663,0.00001704912,0.00001951494,0.000001009246,0.00004324416,0.00131647,0.9504011,0.00007788483,0.0001584231,0.004368843],"study_design_scores_gemma":[0.0007406289,0.0002412615,0.677748,0.00001174652,0.00002190463,0.000006321947,0.0005130109,0.001113262,0.2924163,0.001266056,0.02558984,0.0003316924],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9891781,0.01008001,0.00007635165,0.00006406677,0.0001675327,0.00007932991,0.0000179261,0.000004251265,0.0003324333],"genre_scores_gemma":[0.9969615,0.002040874,0.0003021037,0.00001048931,0.00004992377,0.00001724701,0.00003170136,0.00001212525,0.0005739859],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.6579849,"threshold_uncertainty_score":0.3481997,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.007405854676744173,"score_gpt":0.2347539175478781,"score_spread":0.2273480628711339,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}