{"id":"W4318938817","doi":"10.1038/s43705-022-00210-8","title":"Genomics discovery of giant fungal viruses from subsurface oceanic crustal fluids","year":2023,"lang":"en","type":"article","venue":"ISME Communications","topic":"Plant and Fungal Interactions Research","field":"Biochemistry, Genetics and Molecular Biology","cited_by":22,"is_retracted":false,"has_abstract":true,"ca_institutions":"","funders":"Office of Science; Advanced Research Projects Agency - Energy; Global Affairs Canada; Joint Genome Institute; U.S. Department of Energy; Gordon and Betty Moore Foundation; Center for Dark Energy Biosphere Investigations; Government of Canada; National Science Foundation","keywords":"Horizontal gene transfer; Biology; Archaea; Genome; Evolutionary biology; Gene; Genetics","routes":{"ca_aff":false,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":true},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001243625,0.00008544012,0.0001044483,0.00006637529,0.0001439415,0.00003728146,0.0007301684,0.00008341914,0.00002880669],"category_scores_gemma":[0.00009302347,0.00008666371,0.00008358873,0.0001844803,0.0001413994,0.00001315054,0.0006176938,0.0001561293,0.0001117084],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0000182142,"about_ca_system_score_gemma":0.0001049115,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0001770487,"about_ca_topic_score_gemma":0.0002231829,"domain_scores_codex":[0.9992965,0.00008913506,0.000199777,0.0001546852,0.00009869553,0.0001612104],"domain_scores_gemma":[0.998572,0.0001209585,0.00005277338,0.001130851,0.00008160089,0.0000417998],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0000362685,0.00006489132,0.002012989,0.000003660415,0.00007043656,0.000001156778,0.00007707917,0.00003831665,0.9906484,0.00041214,0.006338371,0.0002962626],"study_design_scores_gemma":[0.0005146481,0.0001652413,0.06111068,0.00004304334,0.00004886428,0.00001482247,0.0009891872,0.006554116,0.7777305,0.0003492263,0.152116,0.0003636556],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9940729,0.00129077,0.000571247,0.0003606001,0.00008844487,0.0001083412,0.0008890055,0.00002463824,0.002594069],"genre_scores_gemma":[0.9930657,0.003149559,0.0008724729,0.00005615351,0.00005211466,0.00001501952,0.00121212,0.00001603063,0.001560812],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.2129179,"threshold_uncertainty_score":0.3534043,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.05994276437129214,"score_gpt":0.335062107053885,"score_spread":0.2751193426825929,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}