{"id":"W4318938817","doi":"10.1038/s43705-022-00210-8","title":"Genomics discovery of giant fungal viruses from subsurface oceanic crustal fluids","year":2023,"lang":"en","type":"article","venue":"ISME Communications","topic":"Plant and Fungal Interactions Research","field":"Biochemistry, Genetics and Molecular Biology","cited_by":22,"is_retracted":false,"has_abstract":true,"ca_institutions":"","funders":"Office of Science; Advanced Research Projects Agency - Energy; Global Affairs Canada; Joint Genome Institute; U.S. Department of Energy; Gordon and Betty Moore Foundation; Center for Dark Energy Biosphere Investigations; Government of Canada; National Science Foundation","keywords":"Horizontal gene transfer; Biology; Archaea; Genome; Evolutionary biology; Gene; Genetics","routes":{"ca_aff":false,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":true},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001198503,0.000278779,0.0002939944,0.0005501903,0.0002865949,0.000836488,0.0001410771,0.0003678649,0.0004103925],"category_scores_gemma":[0.0002502753,0.0001177704,0.000341121,0.0005394274,0.0001703075,0.000220627,0.0004748124,0.0003477409,0.0002104109],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0002517012,"about_ca_system_score_gemma":0.0002926979,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.002116096,"about_ca_topic_score_gemma":0.002006109,"domain_scores_codex":[0.9998856,0.000007934385,0.000005323542,0.00004079062,0.00003210678,0.00002830351],"domain_scores_gemma":[0.9998287,0.00002521067,0.00005001377,0.0000134865,0.00003667463,0.0000458557],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.0001103354,0.00001356284,0.00966586,0.00007620274,0.00001557354,0.0002018177,0.0001227707,0.0001193635,0.9832165,0.000110069,0.00007774543,0.006270231],"study_design_scores_gemma":[0.00003261346,0.0004756796,0.4216274,0.0001074137,0.0001350767,0.003514424,0.001962473,0.005426237,0.5445013,0.001067331,0.02110977,0.0000402676],"study_design_candidate":"observational","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9948849,0.0009405623,0.001779106,0.00006725657,0.00001628921,0.00001705804,0.001316112,0.00003368624,0.0009450111],"genre_scores_gemma":[0.9915771,0.0007011182,0.004200362,0.00005755628,0.00001306713,0.00001058796,0.002349096,0.00002383741,0.001066993],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.002116096,"threshold_uncertainty_score":0.004207551,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.05994276437129214,"score_gpt":0.335062107053885,"score_spread":0.2751193426825929,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}