{"id":"W4319293609","doi":"10.1111/mec.16874","title":"Host phylogeny and functional traits differentiate gut microbiomes in a diverse natural community of small mammals","year":2023,"lang":"en","type":"article","venue":"Molecular Ecology","topic":"Gut microbiota and health","field":"Biochemistry, Genetics and Molecular Biology","cited_by":22,"is_retracted":false,"has_abstract":true,"ca_institutions":"","funders":"Natural Sciences and Engineering Research Council of Canada; University of Wyoming; Brown University; National Science Foundation","keywords":"Biology; Microbiome; Sympatric speciation; Biome; Phylogenetic tree; Phylogenetics; Host (biology); Evolutionary biology; Ecology; Phylogenetic diversity; Niche; Mammal; Zoology; Ecosystem; Genetics; Gene","routes":{"ca_aff":false,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":true},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0003299123,0.0001748763,0.0003131954,0.001055281,0.0003962238,0.0004486565,0.0001694025,0.0002785396,0.0006421709],"category_scores_gemma":[0.000811294,0.000208388,0.0001910741,0.0005255312,0.000597032,0.0004673465,0.000738526,0.0002212819,0.0001449885],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0001213733,"about_ca_system_score_gemma":0.0001355009,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.001022972,"about_ca_topic_score_gemma":0.002400304,"domain_scores_codex":[0.999686,0.0001073309,0.00002054249,0.00009797156,0.00004120905,0.00004695121],"domain_scores_gemma":[0.9995494,0.00009953068,0.0002018995,0.00004139894,0.00003657781,0.00007111455],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.0002948705,0.00005834952,0.8443218,0.00006624882,0.0001350848,0.0001178081,0.001349823,0.0001467469,0.1461481,0.0001063467,0.00003486323,0.007219856],"study_design_scores_gemma":[0.000001679705,0.00006888652,0.998877,0.000003773192,0.00001001973,0.0001003108,0.0002692449,0.0001454052,0.0003897348,0.00004688289,0.00008443229,0.000002740957],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9997141,0.00009569468,0.0000794828,0.000003747124,3.370058e-7,0.000001877394,0.00002339677,0.000001134789,0.00008016121],"genre_scores_gemma":[0.9994271,0.0000667747,0.0003497823,0.00001365601,0.000002601879,0.000004808026,0.00007885936,0.00000170166,0.00005463741],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.001055281,"threshold_uncertainty_score":0.00214833,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.0167220506817219,"score_gpt":0.2422172803397259,"score_spread":0.225495229658004,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}