{"id":"W4319294542","doi":"10.1080/07391102.2023.2173297","title":"Computational design of candidate multi-epitope vaccine against SARS-CoV-2 targeting structural (S and N) and non-structural (NSP3 and NSP12) proteins","year":2023,"lang":"en","type":"article","venue":"Journal of Biomolecular Structure and Dynamics","topic":"vaccines and immunoinformatics approaches","field":"Biochemistry, Genetics and Molecular Biology","cited_by":9,"is_retracted":false,"has_abstract":true,"ca_institutions":"Institut National de la Recherche Scientifique","funders":"","keywords":"Biology; Virology; Virus; Epitope; Immune system; Viral entry; Computational biology; Viral replication; In silico; Antibody; Immunology; Gene; Genetics","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0002301231,0.0005930382,0.0009295465,0.0005106211,0.000519759,0.0006413549,0.0007512619,0.00099697,0.002521057],"category_scores_gemma":[0.0005573696,0.0004532844,0.0007712976,0.0003392306,0.0003214755,0.0004046143,0.00040555,0.0005350097,0.0002225307],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0005786692,"about_ca_system_score_gemma":0.001578745,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.006420937,"about_ca_topic_score_gemma":0.005761669,"domain_scores_codex":[0.9999232,0.00002025327,0.000003814502,0.00001303879,0.00001410449,0.00002563111],"domain_scores_gemma":[0.9998579,0.00006829468,0.0000161225,0.000005983553,0.00002888532,0.00002285063],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"simulation_or_modeling","study_design_gemma":"simulation_or_modeling","study_design_scores_codex":[0.0001268245,0.00009006627,0.001530541,0.0001233307,0.00005191403,0.000192065,0.00001986732,0.990546,0.002053397,0.001315165,0.0005432049,0.003407724],"study_design_scores_gemma":[0.00004693407,0.00008129366,0.0003080548,0.000007929966,0.00002355326,0.00001759092,0.00002863381,0.9978564,0.0005723726,0.0004851348,0.0005671837,0.00000479555],"study_design_candidate":"simulation_or_modeling","study_design_consensus":"simulation_or_modeling","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9072316,0.001518622,0.06727732,0.001010128,0.0002051403,0.0002699838,0.0008515562,0.0004775863,0.02115802],"genre_scores_gemma":[0.9486631,0.0006945727,0.04501366,0.0002313714,0.00002939344,0.0005439316,0.001063814,0.00008290807,0.003677273],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.006420937,"threshold_uncertainty_score":0.01276714,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.008247040681019072,"score_gpt":0.2469980426660797,"score_spread":0.2387510019850607,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}