{"id":"W4319299889","doi":"10.1093/femsml/uqad006","title":"<i>Mycobacterium tuberculosis</i> infection triggers epigenetic changes that are enriched in a type I IFN signature","year":2023,"lang":"en","type":"article","venue":"microLife","topic":"RNA modifications and cancer","field":"Biochemistry, Genetics and Molecular Biology","cited_by":17,"is_retracted":false,"has_abstract":true,"ca_institutions":"Ottawa Hospital; Institute of Infection and Immunity; University of Ottawa","funders":"National Sanitarium Association; Compute Canada; Canadian Institutes of Health Research; Hospital for Sick Children; University of Ottawa","keywords":"Chromatin; Biology; Epigenetics; Transcription factor; Gene; Chromatin immunoprecipitation; Mycobacterium tuberculosis; Interferon; Genetics; Gene expression; Promoter; Cell biology; Tuberculosis; Medicine","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001124293,0.0002563349,0.0002352908,0.000246973,0.0002071421,0.000372461,0.0001225094,0.0002597061,0.001496975],"category_scores_gemma":[0.000137843,0.0001132004,0.0002330974,0.0002796655,0.000215045,0.0001356374,0.0002427936,0.0003140871,0.0005193814],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0002077345,"about_ca_system_score_gemma":0.0001322126,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0004779156,"about_ca_topic_score_gemma":0.001081337,"domain_scores_codex":[0.9998417,0.00001452046,0.000009403007,0.00005725864,0.00004382337,0.00003328251],"domain_scores_gemma":[0.999881,0.00001088588,0.00005884048,0.00001166456,0.00001705741,0.00002042263],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.000064188,0.000006651903,0.00298866,0.00004886944,0.000006491599,0.00004244996,0.00001232692,0.00002163431,0.9953465,0.00002869622,0.0001153115,0.001318105],"study_design_scores_gemma":[0.00001371277,0.0003331512,0.4333629,0.00004680812,0.00006345283,0.00155497,0.0001819585,0.0008262629,0.5537328,0.000222072,0.009645884,0.00001603014],"study_design_candidate":"observational","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9853911,0.003893775,0.003479169,0.0002707576,0.00006775083,0.00003144576,0.004358645,0.0002154364,0.00229197],"genre_scores_gemma":[0.9893593,0.00136952,0.002278694,0.0003334285,0.00004554175,0.00004065622,0.004194093,0.00004589417,0.002332812],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.001496975,"threshold_uncertainty_score":0.005007863,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01757639027658681,"score_gpt":0.2566038799873,"score_spread":0.2390274897107132,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}