{"id":"W4319334144","doi":"10.1073/pnas.2201076120","title":"Divergent sensory and immune gene evolution in sea turtles with contrasting demographic and life histories","year":2023,"lang":"en","type":"article","venue":"Proceedings of the National Academy of Sciences","topic":"Turtle Biology and Conservation","field":"Environmental Science","cited_by":52,"is_retracted":false,"has_abstract":true,"ca_institutions":"Royal Ontario Museum","funders":"Pacific Islands Fisheries Science Center; Southwest Fisheries Science Center; U.S. National Library of Medicine; Comisión Nacional de Investigación Científica y Tecnológica; University of Massachusetts Amherst; Directorate for Biological Sciences; National Institutes of Health; Horizon 2020 Framework Programme; Ruppin Academic Center; Fundación Bancaria Caixa d'Estalvis i Pensions de Barcelona; Centro Interdisciplinar de Investigação Marinha e Ambiental; University of California, Los Angeles; Universidade do Porto; “la Caixa” Foundation; Max-Planck-Gesellschaft; Vienna Science and Technology Fund; School of Life and Environmental Sciences, Deakin University; Universitat Autònoma de Barcelona; Deakin University; Deutsche Forschungsgemeinschaft; National Oceanic and Atmospheric Administration; Technische Universität Dresden; Generalitat de Catalunya; Bundesministerium für Bildung und Forschung; Universitat Pompeu Fabra; University of Otago; University of Haifa; University of Florida; European Commission; Uppsala Universitet; Johns Hopkins University; U.S. Fish and Wildlife Service; Sea Turtle Conservancy; Ocean Foundation; Universidade Estadual de Campinas; Fundação de Amparo à Pesquisa do Estado de São Paulo; Deutscher Akademischer Austauschdienst; U.S. Geological Survey; University of East Anglia; Universität Wien; Howard Hughes Medical Institute; Science for Life Laboratory; National Science Foundation","keywords":"Biology; Vertebrate; Ecology; Population; Lineage (genetic); Adaptation (eye); Evolutionary biology; Turtle (robot); Sea turtle; Zoology; Gene; Genetics","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0006461464,0.00004560475,0.00006722305,0.0000690481,0.0001582718,0.000005561326,0.000117,0.00004089734,0.000004099574],"category_scores_gemma":[0.0001941137,0.00002965277,0.00001010312,0.0005170433,0.001073285,0.0002253369,0.00009486798,0.00006183491,3.820108e-7],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00002445008,"about_ca_system_score_gemma":0.000007161423,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00003313403,"about_ca_topic_score_gemma":0.000001624878,"domain_scores_codex":[0.9993623,0.000006040377,0.0001254023,0.0001383957,0.0002851001,0.00008272679],"domain_scores_gemma":[0.9997634,0.00006519381,0.0001310806,0.000003263902,0.00001918973,0.00001789497],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.00001312547,0.000005130219,0.8563843,0.000009020305,0.000003012552,5.43463e-9,0.0001810125,0.00007316467,0.140076,0.003091537,0.00002500014,0.0001386385],"study_design_scores_gemma":[0.00009905446,0.00002103578,0.9796032,0.00001782138,0.000003979922,0.00000292564,0.0002213584,0.001055771,0.009619501,0.009301398,0.00001611036,0.00003787154],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9976421,0.0002092031,7.03134e-7,0.001706538,0.00000855589,0.00007309557,0.000003456567,0.000007532822,0.0003488214],"genre_scores_gemma":[0.9995939,0.00004764148,0.000234753,0.00006412921,0.000009169202,0.000004440821,1.052263e-7,0.00000112284,0.00004477413],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.1304565,"threshold_uncertainty_score":0.3954562,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.02350513302422165,"score_gpt":0.2329955952817056,"score_spread":0.2094904622574839,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}