{"id":"W4319705355","doi":"10.1128/jvi.03149-15","title":"Global Genomic Diversity of Human Papillomavirus 11 Based on 433 Isolates and 78 Complete Genome Sequences","year":2016,"lang":"en","type":"article","venue":"Journal of Virology","topic":"Cervical Cancer and HPV Research","field":"Medicine","cited_by":27,"is_retracted":false,"has_abstract":true,"ca_institutions":"Public Health Agency of Canada","funders":"National Institute of Allergy and Infectious Diseases; National Institutes of Health; National Cancer Institute; Merck Sharp and Dohme; Javna Agencija za Raziskovalno Dejavnost RS; European Society of Clinical Microbiology and Infectious Diseases","keywords":"Biology; Phylogenetic tree; Genetics; GenBank; Genome; Indel; Single-nucleotide polymorphism; Gene; Genotype","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0004714006,0.0002549072,0.0004134623,0.001044213,0.000395849,0.0005764955,0.0001354831,0.0002320094,0.0009975714],"category_scores_gemma":[0.000657179,0.0001304255,0.0003854429,0.001990449,0.0002172737,0.0002344001,0.0004584409,0.0003048196,0.0002634708],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0002249747,"about_ca_system_score_gemma":0.0003427998,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.002985192,"about_ca_topic_score_gemma":0.003201646,"domain_scores_codex":[0.9996349,0.00005517933,0.00003457005,0.0001306226,0.00007189409,0.00007285595],"domain_scores_gemma":[0.9995258,0.00009432017,0.0001175851,0.00006843359,0.0001171148,0.00007668848],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.0009239592,0.0000907557,0.7902655,0.0002150917,0.0002374658,0.0005078731,0.001542478,0.001011283,0.1795425,0.0001590951,0.0003743602,0.02512966],"study_design_scores_gemma":[0.000007944954,0.0001609596,0.9928179,0.00001893211,0.00006593954,0.0006324853,0.0004979657,0.0005116572,0.003325897,0.00004225628,0.001911441,0.000006670807],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9964949,0.0002115944,0.000573337,0.000009376923,0.000002607316,0.00002066658,0.00217199,0.00001196934,0.0005035204],"genre_scores_gemma":[0.9889535,0.0002315445,0.002022508,0.00002021304,0.000006254169,0.00003398788,0.008466168,0.00001225329,0.0002535594],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.002985192,"threshold_uncertainty_score":0.005935609,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.05298806725351579,"score_gpt":0.3327683945773665,"score_spread":0.2797803273238507,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}