{"id":"W4319736418","doi":"10.3920/978-90-8686-940-4_376","title":"376. Haplotype-based single-step GWAS for yearling temperament in American Angus","year":2022,"lang":"en","type":"article","venue":"","topic":"Genetic and phenotypic traits in livestock","field":"Biochemistry, Genetics and Molecular Biology","cited_by":0,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of Guelph","funders":"","keywords":"Genome-wide association study; Single-nucleotide polymorphism; Linkage disequilibrium; Haplotype; Genetics; Biology; Genetic association; Genetic architecture; Trait; Allele; Quantitative trait locus; Genotype; Gene; Computer science","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0008300063,0.000243018,0.0003215221,0.0003258879,0.0004371665,0.0004182068,0.0001750415,0.0002097461,0.002059871],"category_scores_gemma":[0.0008067491,0.0001541336,0.0005203179,0.0006290037,0.0001413747,0.0001482012,0.0001796257,0.0002489516,0.0001801939],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0001322834,"about_ca_system_score_gemma":0.0001985466,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.005190097,"about_ca_topic_score_gemma":0.01588489,"domain_scores_codex":[0.9995516,0.0001763543,0.00003122967,0.0001634262,0.00004361552,0.00003381179],"domain_scores_gemma":[0.9994597,0.0002172505,0.000114019,0.0000820877,0.0000598941,0.00006703453],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.001059649,0.00007882684,0.9594065,0.00005379077,0.00112538,0.0002805646,0.0001671175,0.0006437118,0.02188808,0.0001029092,0.0003920166,0.01480149],"study_design_scores_gemma":[0.00002466852,0.0001205476,0.9967,0.000005454518,0.0003293756,0.0001978846,0.00004520757,0.001444777,0.0005700325,0.0000513719,0.000505594,0.000005205616],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9979404,0.0001349269,0.001247557,0.00002010786,0.000008637008,0.000007429097,0.000456969,0.00001581107,0.0001681398],"genre_scores_gemma":[0.9969473,0.00005935764,0.001876016,0.00002698616,0.00001091557,0.0000192286,0.0006512938,0.00000896575,0.0003997834],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.005190097,"threshold_uncertainty_score":0.01031977,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01502935605995159,"score_gpt":0.2462394433545027,"score_spread":0.2312100872945511,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}