{"id":"W4319874021","doi":"10.1016/j.meegid.2023.105414","title":"Next-generation sequencing approach to investigate genome variability of Parapoxvirus in Canadian muskoxen (Ovibos moschatus)","year":2023,"lang":"en","type":"article","venue":"Infection Genetics and Evolution","topic":"Poxvirus research and outbreaks","field":"Immunology and Microbiology","cited_by":6,"is_retracted":false,"has_abstract":true,"ca_institutions":"Government of Nunavut; University of Calgary","funders":"","keywords":"Biology; Phylogenetic tree; Contig; Genome; Genetics; Phylogenetics; DNA sequencing; ORFS; Virus; Virology; Gene; Open reading frame; Peptide sequence","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":true,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001871871,0.0002053857,0.0002356287,0.0009453591,0.0007026594,0.0003552325,0.0002271332,0.0002628378,0.0005089471],"category_scores_gemma":[0.0002588829,0.0001398186,0.0002809825,0.0007395275,0.0001524989,0.0001233953,0.0002264452,0.0003167366,0.0001301069],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.001482037,"about_ca_system_score_gemma":0.001057042,"about_ca_topic_candidate":true,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.1938031,"about_ca_topic_score_gemma":0.4175368,"domain_scores_codex":[0.9998754,0.000004778538,0.000003707494,0.00004602223,0.00004020229,0.0000298977],"domain_scores_gemma":[0.9998845,0.00001402458,0.00002018577,0.000005923375,0.00005341817,0.00002206824],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.0001636994,0.00003576137,0.04533663,0.0001030513,0.0000819581,0.0002028864,0.0006960813,0.0007812788,0.9414861,0.0002666659,0.0002440897,0.01060179],"study_design_scores_gemma":[0.00001829705,0.000177328,0.9397044,0.00002975121,0.0001424376,0.0003922749,0.0008744392,0.006403492,0.03915123,0.0001908505,0.01288249,0.00003301637],"study_design_candidate":"observational","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9904821,0.0006086167,0.003245849,0.00003905269,0.000008343856,0.00005840105,0.003966867,0.0000627909,0.001527866],"genre_scores_gemma":[0.9678293,0.0005770458,0.01615852,0.0001597779,0.000008626101,0.00008862786,0.0119485,0.00005504352,0.003174541],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.8061969,"threshold_uncertainty_score":0.38535,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.06441280504606822,"score_gpt":0.2646747238805212,"score_spread":0.2002619188344529,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}