{"id":"W4320167767","doi":"10.1094/pdis-11-22-2690-re","title":"Hybrid Genome Assembly of <i>Berkeleyomyces rouxiae</i>, an Emerging <i>Cannabis</i> Fungal Pathogen Causing Black Root Rot in an Aeroponic Facility","year":2023,"lang":"en","type":"article","venue":"Plant Disease","topic":"Plant Disease Resistance and Genetics","field":"Agricultural and Biological Sciences","cited_by":6,"is_retracted":false,"has_abstract":true,"ca_institutions":"Okanagan University College; University of British Columbia, Okanagan Campus; University of British Columbia","funders":"Natural Sciences and Engineering Research Council of Canada","keywords":"Biology; Genome; Root rot; Whole genome sequencing; Sequence assembly; DNA sequencing; Nanopore sequencing; Genomics; Cannabis sativa; Genetics; Contig; Gene; Computational biology; Botany; Transcriptome","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":true,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001896803,0.0004009723,0.0003601233,0.0008773433,0.0006393379,0.000657686,0.0003296083,0.000368414,0.002306784],"category_scores_gemma":[0.0003562645,0.0002212537,0.0006065311,0.0007938721,0.0001847164,0.0002588703,0.0004817675,0.0005921566,0.0009579038],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0007826888,"about_ca_system_score_gemma":0.0009213577,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.01809738,"about_ca_topic_score_gemma":0.03268235,"domain_scores_codex":[0.9998109,0.00001407277,0.00001072077,0.00007893398,0.00005366581,0.00003179585],"domain_scores_gemma":[0.9998468,0.00003331781,0.00003103939,0.00001799093,0.00003872848,0.00003211332],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0005288906,0.00004750728,0.005870625,0.0002752623,0.00006687707,0.0004938357,0.0004191253,0.001224189,0.9746654,0.0004771881,0.00098556,0.01494551],"study_design_scores_gemma":[0.0001236672,0.0009653905,0.3269164,0.0002718131,0.0005123645,0.00303812,0.002370323,0.0275645,0.5160856,0.001193239,0.1207438,0.0002147569],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9061063,0.00098055,0.02797805,0.0002742588,0.0001189655,0.0002547471,0.05547107,0.001813946,0.0070022],"genre_scores_gemma":[0.7743263,0.0007811788,0.06434636,0.0001611788,0.00002049822,0.0001656355,0.1498739,0.0006085356,0.009716487],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.01809738,"threshold_uncertainty_score":0.03598404,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.02532430969953767,"score_gpt":0.2440625900665555,"score_spread":0.2187382803670178,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}