{"id":"W4320484684","doi":"10.1038/s41467-023-36449-5","title":"Emergence and spread of two SARS-CoV-2 variants of interest in Nigeria","year":2023,"lang":"en","type":"article","venue":"Nature Communications","topic":"COVID-19 epidemiological studies","field":"Mathematics","cited_by":26,"is_retracted":false,"has_abstract":true,"ca_institutions":"BlueDot (Canada); University of Toronto","funders":"National Institute of Allergy and Infectious Diseases; National Institute of General Medical Sciences; Wellcome Trust; National Human Genome Research Institute; Centers for Disease Control and Prevention; ELMA Foundation; Skoll Foundation; Wellcome; Open Philanthropy Project; World Bank Group; Rockefeller Foundation; National Institutes of Health; U.S. Department of Health and Human Services","keywords":"Pandemic; Transmission (telecommunications); Severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2); Coronavirus disease 2019 (COVID-19); Geography; Phylogeography; Biology; Economic geography; Development economics; Phylogenetics; Genetics; Computer science; Gene; Medicine; Economics; Telecommunications; Disease; Infectious disease (medical specialty)","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0004106117,0.0002041298,0.0002178188,0.0004924351,0.0004348386,0.000632462,0.0001185481,0.0003280052,0.0004399201],"category_scores_gemma":[0.0009151803,0.0001651626,0.0001737647,0.0007474227,0.0002452881,0.0003347254,0.0003524094,0.0004577981,0.00007756834],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.000351643,"about_ca_system_score_gemma":0.0004043888,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.01049548,"about_ca_topic_score_gemma":0.02030524,"domain_scores_codex":[0.9998013,0.00005687835,0.0000167295,0.0000564641,0.0000218547,0.00004683266],"domain_scores_gemma":[0.999708,0.00007028404,0.0001202399,0.0000249304,0.0000410061,0.00003551186],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.0002173259,0.00004756134,0.9825784,0.00003541552,0.00003397027,0.0007505037,0.001739498,0.000569015,0.004822708,0.0003897189,0.0001020104,0.008713799],"study_design_scores_gemma":[0.00001100028,0.00009921728,0.9873882,0.0001258481,0.00003643514,0.001249353,0.007145739,0.001274202,0.001050728,0.0003930074,0.001209278,0.00001698599],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9992265,0.00008378759,0.0001621375,0.0000243681,0.000003234481,0.000005840518,0.00009298539,0.000001095218,0.0004000636],"genre_scores_gemma":[0.9991251,0.0001621032,0.0004226095,0.00001805068,0.0000013899,0.000004395109,0.0001744745,0.000001508243,0.00009039055],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.01049548,"threshold_uncertainty_score":0.02086878,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.4498597283008253,"score_gpt":0.5046931722369894,"score_spread":0.05483344393616413,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}