{"id":"W4320484684","doi":"10.1038/s41467-023-36449-5","title":"Emergence and spread of two SARS-CoV-2 variants of interest in Nigeria","year":2023,"lang":"en","type":"article","venue":"Nature Communications","topic":"COVID-19 epidemiological studies","field":"Mathematics","cited_by":26,"is_retracted":false,"has_abstract":true,"ca_institutions":"BlueDot (Canada); University of Toronto","funders":"National Institute of Allergy and Infectious Diseases; National Institute of General Medical Sciences; Wellcome Trust; National Human Genome Research Institute; Centers for Disease Control and Prevention; ELMA Foundation; Skoll Foundation; Wellcome; Open Philanthropy Project; World Bank Group; Rockefeller Foundation; National Institutes of Health; U.S. Department of Health and Human Services","keywords":"Pandemic; Transmission (telecommunications); Severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2); Coronavirus disease 2019 (COVID-19); Geography; Phylogeography; Biology; Economic geography; Development economics; Phylogenetics; Genetics; Computer science; Gene; Medicine; Economics; Telecommunications; Disease; Infectious disease (medical specialty)","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0007321864,0.00008214946,0.0002993486,0.0001008501,0.00005336492,0.000002589486,0.0006447821,0.000123037,0.000008490959],"category_scores_gemma":[0.007108386,0.0000688971,0.00004244781,0.0005682037,0.0002040364,0.00003735647,0.0008974005,0.0003983208,0.000004707842],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00001341225,"about_ca_system_score_gemma":0.0000154564,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0001501579,"about_ca_topic_score_gemma":0.009176509,"domain_scores_codex":[0.9990751,0.000222638,0.0004082962,0.000123725,0.00005524039,0.0001149728],"domain_scores_gemma":[0.9950315,0.003685923,0.000176296,0.001002006,0.00009013142,0.00001415485],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"theoretical_or_conceptual","study_design_gemma":"theoretical_or_conceptual","study_design_scores_codex":[0.00002427797,0.0004070235,0.18211,0.0002460641,0.0001153674,0.000002028868,0.002939735,0.000004664661,0.06549303,0.7205868,0.02627322,0.001797753],"study_design_scores_gemma":[0.0006177902,0.00006909215,0.3491741,0.0003467828,0.00004207458,0.000001829313,0.0007456577,0.001657732,0.005401154,0.6380635,0.003638749,0.0002414379],"study_design_candidate":"theoretical_or_conceptual","study_design_consensus":"theoretical_or_conceptual","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9900559,0.002218974,0.0001663633,0.005369166,0.00007547177,0.000256949,0.00004687077,0.00006407851,0.001746182],"genre_scores_gemma":[0.9900243,0.001401676,0.008386158,0.0001310231,0.000005879922,0.00002246787,0.000007020537,0.000006856646,0.00001457118],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.1670642,"threshold_uncertainty_score":0.8509915,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.4498597283008253,"score_gpt":0.5046931722369894,"score_spread":0.05483344393616413,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}