{"id":"W4320486808","doi":"10.1002/cpz1.661","title":"Pseudoknots in RNA Structure Prediction","year":2023,"lang":"en","type":"review","venue":"Current Protocols","topic":"RNA and protein synthesis mechanisms","field":"Biochemistry, Genetics and Molecular Biology","cited_by":5,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of Victoria","funders":"","keywords":"Pseudoknot; RNA; Computational biology; Nucleic acid structure; Computer science; Nucleic acid secondary structure; Function (biology); Biology; Genetics; Gene","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.001803998,0.001969242,0.002123288,0.002624325,0.000488878,0.00168193,0.00309338,0.00176538,0.004342019],"category_scores_gemma":[0.002684701,0.00116444,0.001466505,0.003251352,0.001236522,0.002540248,0.001319218,0.00323422,0.006682262],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0009160832,"about_ca_system_score_gemma":0.001276813,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00143672,"about_ca_topic_score_gemma":0.00121063,"domain_scores_codex":[0.9988839,0.000178168,0.00007989949,0.0002833515,0.0005043277,0.0000703418],"domain_scores_gemma":[0.9984311,0.0009537254,0.0001486333,0.00009279228,0.0003162741,0.00005743144],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"design_other","study_design_gemma":"not_applicable","study_design_scores_codex":[0.00009909006,0.00008944685,0.0004475502,0.01061752,0.0001843833,0.0001884526,0.00008204042,0.01329979,0.00855807,0.01787458,0.02505951,0.9234995],"study_design_scores_gemma":[0.00004734792,0.0001726783,0.0008482985,0.004594686,0.000230415,0.001691723,0.00007359633,0.02868068,0.02686963,0.04296398,0.8936467,0.0001802049],"study_design_candidate":"not_applicable","study_design_consensus":null,"genre_codex":"review","genre_gemma":"review","genre_scores_codex":[0.001111949,0.8812708,0.1089762,0.0006073552,0.0008757549,0.00008857793,0.0003985697,0.001313777,0.005356996],"genre_scores_gemma":[0.009933566,0.8977534,0.0844558,0.000561857,0.0005970652,0.0001643573,0.001558449,0.0003167063,0.00465891],"genre_candidate":"review","genre_consensus":"review","teacher_disagreement_score":0.004342019,"threshold_uncertainty_score":0.01452547,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.1027608634894581,"score_gpt":0.4057780087949539,"score_spread":0.3030171453054957,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}