{"id":"W4320709262","doi":"10.1128/mbio.03424-22","title":"Amino Acid Availability Determines Plant Immune Homeostasis in the Rhizosphere Microbiome","year":2023,"lang":"en","type":"article","venue":"mBio","topic":"Plant-Microbe Interactions and Immunity","field":"Agricultural and Biological Sciences","cited_by":30,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of British Columbia","funders":"National Institute of General Medical Sciences; China Scholarship Council; Natural Sciences and Engineering Research Council of Canada; Government of Canada; National Institutes of Health; National Science Foundation","keywords":"Microbiome; Rhizosphere; Immune system; Homeostasis; Biology; Amino acid; Plant Immunity; Plant roots; Computational biology; Microbiology; Bacteria; Chemistry; Biochemistry; Immunology; Bioinformatics; Cell biology; Botany; Genetics; Arabidopsis","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0002053451,0.0001514453,0.0002710931,0.0002462009,0.0002479765,0.0006708876,0.0001411073,0.0004435968,0.0008612227],"category_scores_gemma":[0.0002327439,0.0001754093,0.0001250505,0.0001323982,0.0002650824,0.0004922175,0.0005076383,0.0004017686,0.0002912023],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0003046792,"about_ca_system_score_gemma":0.000251553,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0009386931,"about_ca_topic_score_gemma":0.001739189,"domain_scores_codex":[0.9998381,0.0000339411,0.000007553347,0.00004423268,0.00002374366,0.00005250592],"domain_scores_gemma":[0.9998062,0.00004263102,0.00005441328,0.00001153421,0.00002819838,0.00005686204],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0001280524,0.00001597325,0.003441792,0.00002214822,0.000005132632,0.00002244118,0.0000336953,0.00003677358,0.9947978,0.00006847076,0.00002596525,0.00140166],"study_design_scores_gemma":[0.00003865746,0.0007005087,0.6110789,0.00005184234,0.00006110082,0.0004797482,0.001307827,0.00577998,0.3745272,0.00141445,0.00450924,0.00005052578],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.996883,0.0009096553,0.0008912812,0.0001211007,0.000006639313,0.000006303961,0.00009708756,0.00001856821,0.001066381],"genre_scores_gemma":[0.9986827,0.0002801601,0.0005317496,0.00005283118,0.000003608043,0.000006320367,0.00007561275,0.000006282614,0.0003607425],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.0009386931,"threshold_uncertainty_score":0.00288111,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.02523211838704316,"score_gpt":0.224807477594954,"score_spread":0.1995753592079109,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}