{"id":"W4320709935","doi":"10.1128/mra.01213-22","title":"Complete Genome Sequences of Mycobacterium bovis Strains Affiliated with Bovine Tuberculosis Outbreaks in Canada in 2016 and 2018","year":2023,"lang":"en","type":"article","venue":"Microbiology Resource Announcements","topic":"Mycobacterium research and diagnosis","field":"Medicine","cited_by":2,"is_retracted":false,"has_abstract":true,"ca_institutions":"Canadian Food Inspection Agency","funders":"Canadian Food Inspection Agency","keywords":"Mycobacterium bovis; Outbreak; Bovine tuberculosis; Tuberculosis; Livestock; Virology; Mycobacterium tuberculosis; Biology; Infectious disease (medical specialty); Genome; Whole genome sequencing; Mycobacterium; Zoonosis; Microbiology; Veterinary medicine; Disease; Medicine; Genetics; Gene; Ecology","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":true,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0003259071,0.0002232104,0.000551176,0.0003548115,0.00004269732,0.00001108355,0.0001530015,0.0001017299,0.0001635851],"category_scores_gemma":[0.00005290496,0.000160835,0.00002982192,0.0006191964,0.0002345745,0.00005485798,0.0001348252,0.0002222498,0.00002346592],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0003470973,"about_ca_system_score_gemma":0.0007483912,"about_ca_topic_candidate":true,"about_ca_topic_consensus":true,"about_ca_topic_score_codex":0.3478961,"about_ca_topic_score_gemma":0.4758592,"domain_scores_codex":[0.9981424,0.0001365326,0.0004535207,0.0004328229,0.0001510595,0.0006836394],"domain_scores_gemma":[0.9992895,0.00009472987,0.0001086849,0.0002658169,0.00008199598,0.0001592397],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.0003748887,0.00006034828,0.4202083,0.0001077617,0.00006090523,0.0001762917,0.0001761498,0.00000998052,0.5758822,4.249827e-7,0.002813432,0.0001293484],"study_design_scores_gemma":[0.004560724,0.001494757,0.894771,0.0005176745,0.00004657334,0.0001077111,0.001305963,0.00006061236,0.001638003,0.000003297988,0.09514232,0.0003513404],"study_design_candidate":"observational","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.993502,0.000318522,6.468363e-7,0.001277296,0.00003376291,0.0004619378,0.004097912,0.000019908,0.0002880772],"genre_scores_gemma":[0.9939262,0.0005098468,0.0000520647,0.0005142085,0.00002750282,0.00004767856,0.004535418,0.00002077312,0.0003662889],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.5742442,"threshold_uncertainty_score":0.6564463,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01770132642122593,"score_gpt":0.2410953773638555,"score_spread":0.2233940509426295,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}