{"id":"W4320709935","doi":"10.1128/mra.01213-22","title":"Complete Genome Sequences of Mycobacterium bovis Strains Affiliated with Bovine Tuberculosis Outbreaks in Canada in 2016 and 2018","year":2023,"lang":"en","type":"article","venue":"Microbiology Resource Announcements","topic":"Mycobacterium research and diagnosis","field":"Medicine","cited_by":2,"is_retracted":false,"has_abstract":true,"ca_institutions":"Canadian Food Inspection Agency","funders":"Canadian Food Inspection Agency","keywords":"Mycobacterium bovis; Outbreak; Bovine tuberculosis; Tuberculosis; Livestock; Virology; Mycobacterium tuberculosis; Biology; Infectious disease (medical specialty); Genome; Whole genome sequencing; Mycobacterium; Zoonosis; Microbiology; Veterinary medicine; Disease; Medicine; Genetics; Gene; Ecology","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":true,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0004881195,0.0009541166,0.0006932251,0.004333287,0.002851024,0.001030557,0.0007303141,0.0005980346,0.003555473],"category_scores_gemma":[0.001877857,0.0003590877,0.0005373271,0.007277015,0.0005116362,0.0003331905,0.0007282343,0.001132814,0.00116849],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.01119609,"about_ca_system_score_gemma":0.02378347,"about_ca_topic_candidate":true,"about_ca_topic_consensus":true,"about_ca_topic_score_codex":0.8937849,"about_ca_topic_score_gemma":0.9339392,"domain_scores_codex":[0.9991671,0.00002179763,0.00005204662,0.0001255315,0.0004145553,0.0002190225],"domain_scores_gemma":[0.9977603,0.0001302682,0.000289949,0.00005871607,0.001368925,0.0003917913],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.006225943,0.0003724792,0.2381295,0.005691816,0.0004991167,0.007165814,0.007182022,0.003273816,0.3611668,0.003091593,0.2014657,0.1657354],"study_design_scores_gemma":[0.0001010272,0.0001175359,0.6786023,0.0006311649,0.0002965228,0.001537842,0.002436216,0.0005723487,0.009491581,0.0003285045,0.3057579,0.0001270567],"study_design_candidate":"observational","study_design_consensus":null,"genre_codex":"dataset","genre_gemma":"empirical","genre_scores_codex":[0.2202683,0.01080777,0.00195103,0.001998064,0.0005536485,0.0003246081,0.7477949,0.0004424345,0.01585927],"genre_scores_gemma":[0.2229696,0.008764558,0.0111568,0.0009045126,0.0001226141,0.0001656809,0.7443949,0.0001683639,0.01135299],"genre_candidate":"empirical","genre_consensus":null,"teacher_disagreement_score":0.1062151,"threshold_uncertainty_score":0.2136811,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01770132642122593,"score_gpt":0.2410953773638555,"score_spread":0.2233940509426295,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}