{"id":"W4320719569","doi":"10.1136/gutjnl-2022-328375","title":"Gut virome-colonising <i>Orthohepadnavirus</i> genus is associated with ulcerative colitis pathogenesis and induces intestinal inflammation <i>in vivo</i>","year":2023,"lang":"en","type":"article","venue":"Gut","topic":"Viral gastroenteritis research and epidemiology","field":"Medicine","cited_by":31,"is_retracted":false,"has_abstract":true,"ca_institutions":"Western University","funders":"Associazione Italiana per la Ricerca sul Cancro; Ministero della Salute; Fondazione Cariplo; European Crohn's and Colitis Organisation","keywords":"Human virome; Pathogenesis; Ulcerative colitis; Inflammation; In vivo; Colitis; Biology; Medicine; Immunology; Pathology; Disease; Genetics; Gene","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0006373067,0.0001717641,0.0004151139,0.0002165069,0.000116642,0.00003577511,0.00006536643,0.0001138534,0.00005897958],"category_scores_gemma":[0.000874069,0.0001492549,0.00004323582,0.0004922212,0.0002065461,0.0001441585,0.00007710231,0.0002659356,0.00003693385],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0001069631,"about_ca_system_score_gemma":0.00008669259,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0002530745,"about_ca_topic_score_gemma":0.000995826,"domain_scores_codex":[0.9982451,0.0002698647,0.0003357931,0.0003426337,0.0002576945,0.0005489829],"domain_scores_gemma":[0.9993185,0.0001266397,0.0001090833,0.0001428271,0.0001144421,0.0001884804],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.001533126,0.0001049357,0.4935003,0.0001300202,0.0001611769,0.002366065,0.001500375,0.00002716274,0.4660148,0.00006503936,0.003754563,0.0308424],"study_design_scores_gemma":[0.001943434,0.001091689,0.9905503,0.0004599554,0.00003388226,0.0002236937,0.0002500416,0.0008427819,0.002927168,0.00009159524,0.001431108,0.0001543038],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9965377,0.00004902104,0.00005841238,0.002135762,0.0000406206,0.0003998462,0.00009076069,0.00009149134,0.0005963476],"genre_scores_gemma":[0.9978504,0.0002386855,0.0003475979,0.0008009875,0.00009423247,0.00008763561,0.00009120427,0.00002462547,0.0004646217],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.49705,"threshold_uncertainty_score":0.6086438,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.03313890038107112,"score_gpt":0.3024189598663563,"score_spread":0.2692800594852851,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}