{"id":"W4320719569","doi":"10.1136/gutjnl-2022-328375","title":"Gut virome-colonising <i>Orthohepadnavirus</i> genus is associated with ulcerative colitis pathogenesis and induces intestinal inflammation <i>in vivo</i>","year":2023,"lang":"en","type":"article","venue":"Gut","topic":"Viral gastroenteritis research and epidemiology","field":"Medicine","cited_by":31,"is_retracted":false,"has_abstract":true,"ca_institutions":"Western University","funders":"Associazione Italiana per la Ricerca sul Cancro; Ministero della Salute; Fondazione Cariplo; European Crohn's and Colitis Organisation","keywords":"Human virome; Pathogenesis; Ulcerative colitis; Inflammation; In vivo; Colitis; Biology; Medicine; Immunology; Pathology; Disease; Genetics; Gene","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001032531,0.0002549935,0.0001874655,0.0002574872,0.0001667515,0.0002976422,0.00005926379,0.0002290693,0.001469618],"category_scores_gemma":[0.0001137882,0.0001054924,0.0002317014,0.0001702764,0.0002616023,0.0001124714,0.0002044839,0.000418969,0.0002749145],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0001391187,"about_ca_system_score_gemma":0.00008164777,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0001805528,"about_ca_topic_score_gemma":0.0001877233,"domain_scores_codex":[0.999843,0.00002490301,0.00001181315,0.00005559224,0.00003345597,0.00003117038],"domain_scores_gemma":[0.9998569,0.00001541283,0.00007648335,0.00001319239,0.00001028501,0.00002770725],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0001753689,0.00001598757,0.005365707,0.00006735761,0.00001133301,0.0001140044,0.00002435872,0.0000180486,0.9925492,0.00004255291,0.00004398583,0.001572139],"study_design_scores_gemma":[0.00003864763,0.001513173,0.4214711,0.00007309947,0.0001197074,0.005767092,0.0003817918,0.001084483,0.5624984,0.0002067937,0.006827589,0.00001808133],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.996106,0.001598743,0.001095989,0.00006147784,0.00001565603,0.00001556618,0.00028984,0.00004678548,0.0007699159],"genre_scores_gemma":[0.9962026,0.000833137,0.001101753,0.00008520671,0.00001803159,0.00001906198,0.0006991985,0.00001492937,0.001026077],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.001469618,"threshold_uncertainty_score":0.00491637,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.03313890038107112,"score_gpt":0.3024189598663563,"score_spread":0.2692800594852851,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}