{"id":"W4321095471","doi":"10.3390/plants12040881","title":"Untargeted Metabolomics for Integrative Taxonomy: Metabolomics, DNA Marker-Based Sequencing, and Phenotype Bioimaging","year":2023,"lang":"en","type":"article","venue":"Plants","topic":"Bryophyte Studies and Records","field":"Agricultural and Biological Sciences","cited_by":20,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of New Brunswick","funders":"Natural Sciences and Engineering Research Council of Canada; Deutsche Forschungsgemeinschaft","keywords":"Metabolomics; Biology; Phylogenetic tree; DNA sequencing; Computational biology; Molecular marker; Chemotaxonomy; Clade; Phylogenetics; Taxon; Taxonomy (biology); DNA; Evolutionary biology; Gene; Genetics; Bioinformatics; Botany","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0002365398,0.0001697181,0.0002752004,0.00002286504,0.0002798071,0.00004337172,0.0001275303,0.00006325742,0.00004597994],"category_scores_gemma":[0.0000661156,0.00006206083,0.00007869291,0.0002316241,0.00007593093,0.00006527206,0.00006312554,0.00008696893,0.00001948436],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00002621388,"about_ca_system_score_gemma":0.00001703194,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0003186867,"about_ca_topic_score_gemma":0.0005933262,"domain_scores_codex":[0.9990853,0.00003786687,0.0001672877,0.0003056225,0.00007549713,0.000328425],"domain_scores_gemma":[0.9994553,0.0003028436,0.00008173209,0.00004002763,0.00004975444,0.00007039514],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"design_other","study_design_gemma":"not_applicable","study_design_scores_codex":[0.001053368,0.0001595711,0.0833398,0.0001335292,0.0008189,0.00003204839,0.0008429913,0.00003936649,0.336548,0.001228937,0.07501716,0.5007863],"study_design_scores_gemma":[0.001124309,0.0003517142,0.2172266,0.00007883372,0.000136135,0.000004791508,0.005052116,0.01438332,0.01396326,0.001702115,0.745104,0.0008727407],"study_design_candidate":"not_applicable","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9953974,0.0006319804,0.00004684703,0.0009997467,0.001105589,0.0004447173,0.0007879471,0.0001305891,0.0004551972],"genre_scores_gemma":[0.9944101,0.000805807,0.002244537,0.000592491,0.00081157,0.0001465909,0.0005051731,0.000003831934,0.0004798846],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.6700869,"threshold_uncertainty_score":0.2530767,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.04456883182051279,"score_gpt":0.2325162503050854,"score_spread":0.1879474184845726,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}