{"id":"W4321325611","doi":"10.1101/2023.02.17.528929","title":"Chromatin accessibility associated with aquaculture relevant traits in tilapia","year":2023,"lang":"en","type":"preprint","venue":"bioRxiv (Cold Spring Harbor Laboratory)","topic":"Genetic and phenotypic traits in livestock","field":"Biochemistry, Genetics and Molecular Biology","cited_by":1,"is_retracted":false,"has_abstract":true,"ca_institutions":"Genome British Columbia","funders":"Biotechnology and Biological Sciences Research Council; Directorate for Biological Sciences; UK Research and Innovation","keywords":"Biology; Nile tilapia; Aquaculture; Tilapia; Oreochromis; Euryhaline; Gene; Single-nucleotide polymorphism; Genetics; Genotype; Evolutionary biology; Fishery; Ecology; Salinity; Fish <Actinopterygii>","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00009673821,0.0001075133,0.00017891,0.0002819929,0.0001498164,0.00018494,0.0000674095,0.0001125876,0.001968782],"category_scores_gemma":[0.0001735436,0.00009351706,0.0001468139,0.0002763497,0.0001748097,0.00007084542,0.0002317012,0.0001604754,0.0002319238],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0001382964,"about_ca_system_score_gemma":0.00008134057,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.001408149,"about_ca_topic_score_gemma":0.002157694,"domain_scores_codex":[0.9999126,0.000005555103,0.000004923168,0.00004818059,0.0000144603,0.00001433151],"domain_scores_gemma":[0.9998442,0.00003817671,0.00006239381,0.00001121211,0.00001929936,0.00002477302],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0002471417,0.00001091465,0.0647507,0.00006112031,0.00003924202,0.0000835669,0.0001300439,0.0001763502,0.9312771,0.0000716737,0.0001130809,0.003039151],"study_design_scores_gemma":[0.00001205494,0.00007173972,0.9590641,0.00000618249,0.00003626066,0.0001872924,0.0001065455,0.0006659242,0.03880456,0.0001916203,0.0008445492,0.000009138645],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9977968,0.0001169668,0.0006542212,0.00001426801,0.000003641586,0.000002838319,0.001119826,0.0000213618,0.0002700224],"genre_scores_gemma":[0.9978448,0.00002977856,0.000338389,0.00002763868,0.000002552032,0.000006521163,0.001105388,0.00001056972,0.000634439],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.001968782,"threshold_uncertainty_score":0.006586194,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01586699059294206,"score_gpt":0.232869705796388,"score_spread":0.2170027152034459,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}