{"id":"W4321361506","doi":"10.1093/gbe/evad029","title":"Horizontal Gene Transfer and Fusion Spread Carotenogenesis Among Diverse Heterotrophic Protists","year":2023,"lang":"en","type":"article","venue":"Genome Biology and Evolution","topic":"Protist diversity and phylogeny","field":"Biochemistry, Genetics and Molecular Biology","cited_by":11,"is_retracted":false,"has_abstract":true,"ca_institutions":"Dalhousie University","funders":"Gordon and Betty Moore Foundation; Stony Brook University; National Science Foundation","keywords":"Biology; Horizontal gene transfer; Gene; Gene cluster; Actinobacteria; Phylum; Biosynthesis; Bacteroidetes; Genetics; Phylogenetics; Evolutionary biology; 16S ribosomal RNA","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001119023,0.0001851498,0.00008745112,0.0003720926,0.0002894259,0.000347201,0.0001346412,0.0002317657,0.0006868139],"category_scores_gemma":[0.0002785837,0.0001035096,0.0001320004,0.0003582923,0.0002112278,0.0002157167,0.0006257065,0.0003209815,0.0001910764],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0002957848,"about_ca_system_score_gemma":0.0001816587,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0009185519,"about_ca_topic_score_gemma":0.001150806,"domain_scores_codex":[0.9998633,0.00001244598,0.00000624663,0.00004220521,0.00003958431,0.00003627071],"domain_scores_gemma":[0.9998556,0.00003044087,0.00004149061,0.00002842552,0.00001682264,0.000027233],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.00009978037,0.00002125134,0.02107496,0.00002980558,0.00001449817,0.0001912546,0.0002250463,0.00006683885,0.9646077,0.0003924339,0.0000294247,0.01324708],"study_design_scores_gemma":[0.00005047804,0.0006232278,0.6825916,0.00004220708,0.00009632345,0.005254675,0.001266743,0.002171562,0.2995564,0.0008075053,0.007512327,0.0000270181],"study_design_candidate":"observational","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9981264,0.0001432887,0.0007051987,0.00001760135,0.000002457591,0.000006744607,0.00006307266,0.00001330097,0.0009217458],"genre_scores_gemma":[0.9981851,0.0001621129,0.0008393892,0.00001469876,0.00000237062,0.000008024539,0.0002135794,0.000005528165,0.00056912],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.0009185519,"threshold_uncertainty_score":0.00229764,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.009263550074084465,"score_gpt":0.2117976730866199,"score_spread":0.2025341230125354,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}