{"id":"W4321361506","doi":"10.1093/gbe/evad029","title":"Horizontal Gene Transfer and Fusion Spread Carotenogenesis Among Diverse Heterotrophic Protists","year":2023,"lang":"en","type":"article","venue":"Genome Biology and Evolution","topic":"Protist diversity and phylogeny","field":"Biochemistry, Genetics and Molecular Biology","cited_by":11,"is_retracted":false,"has_abstract":true,"ca_institutions":"Dalhousie University","funders":"Gordon and Betty Moore Foundation; Stony Brook University; National Science Foundation","keywords":"Biology; Horizontal gene transfer; Gene; Gene cluster; Actinobacteria; Phylum; Biosynthesis; Bacteroidetes; Genetics; Phylogenetics; Evolutionary biology; 16S ribosomal RNA","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.000135484,0.0001399421,0.0001297991,0.00005769261,0.0002768554,0.000009758434,0.00008509008,0.0002733387,0.000009423331],"category_scores_gemma":[0.00001110122,0.0001364977,0.00004784406,0.00009134418,0.0002417959,0.000006702802,0.0001634511,0.00006714513,0.00002017445],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0000159575,"about_ca_system_score_gemma":0.0000187562,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0001358105,"about_ca_topic_score_gemma":0.00008971372,"domain_scores_codex":[0.9991258,0.00008196943,0.0001053847,0.0003857282,0.00004456463,0.0002565013],"domain_scores_gemma":[0.9997129,0.000004491577,0.00002223287,0.0001403972,0.00003100418,0.00008901691],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.0001095547,0.00001194253,0.2714027,0.00001800669,0.00003798944,0.000005217988,0.00005922078,0.000007404917,0.7274637,0.0000912703,0.00002710494,0.0007658508],"study_design_scores_gemma":[0.0005385593,0.0005054227,0.9784581,0.000004857377,0.0000313879,0.00002924282,0.00004412805,0.00003324887,0.01912035,0.0002708999,0.000761974,0.0002017972],"study_design_candidate":"observational","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.996913,0.001278853,0.001055139,0.00005167714,0.0001380086,0.0003463642,0.0001457826,0.0000296827,0.00004152074],"genre_scores_gemma":[0.9983748,0.0007615099,0.00007814306,0.00003064031,0.0001722147,0.00003076106,0.0004291968,0.000008987196,0.000113755],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.7083433,"threshold_uncertainty_score":0.5566214,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.009263550074084465,"score_gpt":0.2117976730866199,"score_spread":0.2025341230125354,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}