{"id":"W4321373994","doi":"10.3390/jof9020276","title":"Global Analyses of Multi-Locus Sequence Typing Data Reveal Geographic Differentiation, Hybridization, and Recombination in the Cryptococcus gattii Species Complex","year":2023,"lang":"en","type":"article","venue":"Journal of Fungi","topic":"Fungal Infections and Studies","field":"Medicine","cited_by":11,"is_retracted":false,"has_abstract":true,"ca_institutions":"McMaster University","funders":"Natural Sciences and Engineering Research Council of Canada","keywords":"Biology; Locus (genetics); Population; Phylogenetic tree; Genetics; Evolutionary biology; Gene flow; Linkage disequilibrium; Recombination; Biological dispersal; Phylogenetics; Genetic variation; Allele; Gene; Haplotype","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.000250973,0.0002081096,0.0002081352,0.00126124,0.0001995511,0.0003427329,0.0001271057,0.0001688096,0.000387519],"category_scores_gemma":[0.0005708791,0.00007762,0.0002106959,0.001137755,0.0002755157,0.0001601446,0.0002872531,0.0002085682,0.0001042907],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0002311948,"about_ca_system_score_gemma":0.0001685875,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.002124221,"about_ca_topic_score_gemma":0.003861501,"domain_scores_codex":[0.9997674,0.00002675912,0.00002129285,0.000102261,0.00004458465,0.00003766856],"domain_scores_gemma":[0.9995709,0.00007511705,0.0001916221,0.00004356922,0.0000558304,0.00006288937],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.000314165,0.00003948365,0.7659765,0.00006536079,0.0001358481,0.0002663672,0.0006731381,0.0007217851,0.212259,0.0001074736,0.00009560207,0.01934515],"study_design_scores_gemma":[0.000003484999,0.00007107299,0.9949247,0.000005713449,0.00003575141,0.0003343331,0.0002276215,0.0006996304,0.003367615,0.00004767385,0.0002768821,0.000005383924],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9993207,0.00008390249,0.0003089547,0.000004077626,7.427112e-7,0.000003541287,0.000126235,0.000006346832,0.0001454528],"genre_scores_gemma":[0.9989737,0.0000372806,0.0005572723,0.00000747416,0.000001387727,0.000003577001,0.0003538292,0.000002645496,0.00006273861],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.002124221,"threshold_uncertainty_score":0.004223764,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.2460997091316197,"score_gpt":0.4109124444896281,"score_spread":0.1648127353580084,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}