{"id":"W4321446260","doi":"10.1094/phyto-01-23-0017-sc","title":"A Revised Nomenclature for <i>ToxA</i> Haplotypes Across Multiple Fungal Species","year":2023,"lang":"en","type":"article","venue":"Phytopathology","topic":"Mycotoxins in Agriculture and Food","field":"Agricultural and Biological Sciences","cited_by":16,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of Alberta; Agriculture and Agri-Food Canada","funders":"Agriculture and Agri-Food Canada; Alberta Wheat Commission","keywords":"Pyrenophora; Biology; Bipolaris; Effector; Haplotype; Genetics; Nomenclature; Botany; Gene; Microbiology; Taxonomy (biology); Genotype","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0002887558,0.000183617,0.0002801213,0.00001123889,0.0003223309,0.00004806614,0.0003050875,0.000188943,0.0001990028],"category_scores_gemma":[0.0001604723,0.00006678658,0.0001728081,0.0004858386,0.00007868818,0.00007797225,0.0001194329,0.0001523135,0.0004450644],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00001182206,"about_ca_system_score_gemma":0.000003726527,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.000004975503,"about_ca_topic_score_gemma":0.0002593937,"domain_scores_codex":[0.9986404,0.00005353533,0.0002121987,0.000414683,0.0001225889,0.0005566323],"domain_scores_gemma":[0.9993179,0.0003561249,0.00008342018,0.00008940496,0.00007457305,0.00007858776],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"not_applicable","study_design_scores_codex":[0.0001833789,0.0001054127,0.02083736,0.00003731731,0.00001771737,0.00004917625,0.0003957707,0.000003192388,0.9116247,0.00199232,0.03821755,0.0265361],"study_design_scores_gemma":[0.000373161,0.0005468515,0.2384247,0.00001601217,0.00001342106,0.00004574738,0.0001808475,0.00003206086,0.01092958,0.001524501,0.747612,0.0003011671],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9930685,0.0003559328,0.00001800756,0.001891936,0.0004634733,0.0005082408,0.0005309083,0.0003831308,0.002779837],"genre_scores_gemma":[0.9889774,0.0001206932,0.0002783451,0.0007116925,0.001367062,0.0001961753,0.0003249249,0.000002553126,0.008021208],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.9006951,"threshold_uncertainty_score":0.5720551,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.03839165022874105,"score_gpt":0.2566525401874662,"score_spread":0.2182608899587251,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}