{"id":"W4321474471","doi":"10.5281/zenodo.7661023","title":"ATR phosphoproteomics - Substrate Validation","year":2023,"lang":"en","type":"article","venue":"Zenodo (CERN European Organization for Nuclear Research)","topic":"Mitochondrial Function and Pathology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":0,"is_retracted":false,"has_abstract":true,"ca_institutions":"Université Laval","funders":"","keywords":"Phosphoproteomics; Substrate (aquarium); Computational biology; Nanotechnology; Computer science; Materials science; Biology; Cell biology; Phosphorylation; Protein phosphorylation","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.007419736,0.00491755,0.004330468,0.003917589,0.002176196,0.004324807,0.002668535,0.00135259,0.1400458],"category_scores_gemma":[0.01249208,0.002008214,0.002687315,0.00296106,0.000924069,0.001775524,0.003063529,0.004503431,0.1402538],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.001326717,"about_ca_system_score_gemma":0.002580864,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.001901502,"about_ca_topic_score_gemma":0.002654896,"domain_scores_codex":[0.9955623,0.0009629311,0.0006998294,0.001442479,0.0009110021,0.0004214043],"domain_scores_gemma":[0.9951806,0.00172135,0.0004561579,0.001482271,0.0009360957,0.0002235237],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"not_applicable","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.003635623,0.0002165297,0.005526209,0.007407487,0.001003551,0.001101053,0.0005830422,0.002422205,0.07782193,0.005167444,0.8291631,0.06595179],"study_design_scores_gemma":[0.0009588312,0.0004594914,0.01330729,0.001156826,0.0006486558,0.002375632,0.0003806806,0.02201524,0.2253235,0.01776466,0.7149304,0.0006786997],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"genre_codex":"dataset","genre_gemma":"empirical","genre_scores_codex":[0.0100122,0.001429715,0.2084422,0.0005060455,0.0004456618,0.001460024,0.5168802,0.250683,0.01014101],"genre_scores_gemma":[0.02856189,0.001220151,0.3032043,0.001109119,0.0001119077,0.008179704,0.4950556,0.1460366,0.01652078],"genre_candidate":"empirical","genre_consensus":null,"teacher_disagreement_score":0.1400458,"threshold_uncertainty_score":0.4684998,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.03203784122750822,"score_gpt":0.2485253124950903,"score_spread":0.2164874712675821,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}