{"id":"W4321748423","doi":"10.1080/19490976.2023.2180317","title":"Actively replicating gut bacteria identified by 5-ethynyl-2’-deoxyuridine (EdU) click chemistry and cell sorting","year":2023,"lang":"en","type":"article","venue":"Gut Microbes","topic":"Gut microbiota and health","field":"Biochemistry, Genetics and Molecular Biology","cited_by":10,"is_retracted":false,"has_abstract":true,"ca_institutions":"McGill University","funders":"Canadian Institutes of Health Research; McGill University Health Centre; Kenneth Rainin Foundation; McGill University","keywords":"Bacteria; Biology; Cell sorting; Click chemistry; Gut flora; Microbiology; Bacterial cell structure; Microbial metabolism; Genetics; Cell; Biochemistry; Chemistry","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.0003094567,0.0002687218,0.0002548229,0.00003220198,0.0002613173,0.0001193968,0.0002459322,0.0002685611,0.00004503872],"category_scores_gemma":[0.00009117116,0.0002836996,0.00009201192,0.0001651604,0.00009897252,0.00001060952,0.0003342485,0.0001934873,0.00006478091],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00002365983,"about_ca_system_score_gemma":0.00008084101,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00006773989,"about_ca_topic_score_gemma":0.00001350996,"domain_scores_codex":[0.9981546,0.00004609087,0.0004121315,0.0007521359,0.00008088181,0.0005541522],"domain_scores_gemma":[0.9990304,0.00002318298,0.0002376724,0.0004854202,0.0000752922,0.0001480938],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.000030414,0.00003852091,0.001184907,0.0002024248,0.00002689206,0.00000291785,0.0001251658,5.795787e-7,0.9698125,0.000002658941,0.02761053,0.0009624545],"study_design_scores_gemma":[0.0004917589,0.00004292106,0.006083982,0.00003698673,0.00001924635,0.00002986609,0.0002636984,0.00001016142,0.9324311,0.0000250346,0.06025873,0.0003065301],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9969952,0.001112886,0.00006480252,0.000452548,0.0001151026,0.0002097378,0.000114331,0.0000809101,0.0008545069],"genre_scores_gemma":[0.9856724,0.0009124713,0.0007765457,0.0003582422,0.0002942977,0.00002681116,0.0008991119,0.00006426141,0.01099586],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.03738146,"threshold_uncertainty_score":0.9999615,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.008372190839518684,"score_gpt":0.2537403078186857,"score_spread":0.245368116979167,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}