{"id":"W4321749409","doi":"10.1099/ijsem.0.005735","title":"Phylogenomic analysis of the Neocallimastigomycota: proposal of Caecomycetaceae fam. nov., Piromycetaceae fam. nov., and emended description of the families Neocallimastigaceae and Anaeromycetaceae","year":2023,"lang":"en","type":"article","venue":"INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY","topic":"Mycorrhizal Fungi and Plant Interactions","field":"Agricultural and Biological Sciences","cited_by":18,"is_retracted":false,"has_abstract":true,"ca_institutions":"The Scarborough Hospital; University of Toronto","funders":"National Science Foundation","keywords":"Biology; Taxonomy (biology); Zoology","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0005581055,0.0001859633,0.0007016394,0.0001894136,0.0001305836,0.00002345902,0.0004469054,0.0001253204,0.00008137061],"category_scores_gemma":[0.0002702154,0.00007156897,0.0002910498,0.0005835046,0.0002207718,0.0001463559,0.0002383907,0.0001803088,0.000002989134],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00004187199,"about_ca_system_score_gemma":0.00005159089,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0002025465,"about_ca_topic_score_gemma":0.000162859,"domain_scores_codex":[0.9979677,0.000339996,0.001089815,0.0002006003,0.0002281676,0.0001737177],"domain_scores_gemma":[0.9971387,0.001025657,0.001208322,0.0001009686,0.0004701091,0.00005618548],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.0001521055,0.00008772485,0.3049082,0.000642954,0.001474004,0.000003788017,0.0004556791,0.0003838246,0.6901603,0.001055802,0.0005313431,0.0001442762],"study_design_scores_gemma":[0.0005473749,0.0005143712,0.9805984,0.002908121,0.001763164,0.001727723,0.003515658,0.002922117,0.003165874,0.001400526,0.0006393304,0.0002973443],"study_design_candidate":"observational","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9945883,0.002245464,0.00004266039,0.001024293,0.0006188824,0.00033637,0.001076957,0.000006502495,0.00006058754],"genre_scores_gemma":[0.9980242,0.001469049,0.0001730517,0.0000412834,0.0000687561,0.00000575996,0.00009537384,0.000002129351,0.0001204457],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.6869944,"threshold_uncertainty_score":0.2918498,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01462018053401464,"score_gpt":0.2057008903124342,"score_spread":0.1910807097784196,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}