{"id":"W4322719017","doi":"10.1038/s41467-023-36877-3","title":"Evolutionary ecology of microbial populations inhabiting deep sea sediments associated with cold seeps","year":2023,"lang":"en","type":"article","venue":"Nature Communications","topic":"Methane Hydrates and Related Phenomena","field":"Environmental Science","cited_by":67,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of Calgary","funders":"Basic and Applied Basic Research Foundation of Guangdong Province; National Natural Science Foundation of China","keywords":"Archaea; Biology; Cold seep; Ecology; Extreme environment; Microbial population biology; Microbial mat; Phylogenetic diversity; Phylogenetics; Ecological selection; Bacteria; Gene; Selection (genetic algorithm); Genetics; Methane","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001681107,0.000211767,0.0002715095,0.00121509,0.0004005696,0.0004958324,0.000149162,0.0003231391,0.000535287],"category_scores_gemma":[0.0003454262,0.0001646413,0.0002024996,0.0007189593,0.0004668905,0.0002708575,0.0007811122,0.0002093844,0.000123632],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0002096819,"about_ca_system_score_gemma":0.0001650458,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.002724525,"about_ca_topic_score_gemma":0.005595279,"domain_scores_codex":[0.9998437,0.00002061732,0.000009454487,0.00006091124,0.00002431147,0.00004101151],"domain_scores_gemma":[0.9997177,0.00004089987,0.0001099202,0.00001418692,0.00004697541,0.00007038104],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.0002759113,0.00003230611,0.8683475,0.00005475648,0.00009704517,0.0001671942,0.001842963,0.0003076626,0.1217284,0.0001167954,0.00004743625,0.006982014],"study_design_scores_gemma":[0.000001257669,0.000032154,0.9988278,0.000002670308,0.000006222172,0.00006539616,0.0004773727,0.0001050861,0.0003777431,0.00002653919,0.00007498007,0.000002810038],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.999669,0.00006298389,0.00006806872,0.000004770704,5.4307e-7,0.000001697305,0.00006753861,0.000001400213,0.0001239771],"genre_scores_gemma":[0.9994442,0.00007464268,0.0001401361,0.00001063308,0.000001858369,0.000003237358,0.0001967516,0.00000163274,0.0001267398],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.002724525,"threshold_uncertainty_score":0.005417347,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01793069343523454,"score_gpt":0.2638743148151604,"score_spread":0.2459436213799259,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}