{"id":"W4322754745","doi":"10.1038/s41467-023-36687-7","title":"Genomic attributes of Vibrio cholerae O1 responsible for 2022 massive cholera outbreak in Bangladesh","year":2023,"lang":"en","type":"article","venue":"Nature Communications","topic":"Vibrio bacteria research studies","field":"Biochemistry, Genetics and Molecular Biology","cited_by":53,"is_retracted":false,"has_abstract":true,"ca_institutions":"","funders":"Foreign, Commonwealth and Development Office; International Centre for Diarrhoeal Disease Research, Bangladesh; Wellcome Trust; Styrelsen för Internationellt Utvecklingssamarbete; National Institute of Allergy and Infectious Diseases; Global Affairs Canada; Japan Agency for Medical Research and Development; Division of Intramural Research, National Institute of Allergy and Infectious Diseases; Wellcome; National Institutes of Health; National Science Foundation","keywords":"Vibrio cholerae; Cholera; Outbreak; Serotype; Lineage (genetic); Virology; El Tor; Pandemic; Biology; Clade; Microbiology; Medicine; Coronavirus disease 2019 (COVID-19); Genetics; Gene; Phylogenetics; Bacteria; Infectious disease (medical specialty)","routes":{"ca_aff":false,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":true},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001341997,0.0003261785,0.0001999136,0.0009313831,0.000467261,0.0005473181,0.0001295589,0.0004010725,0.003091329],"category_scores_gemma":[0.0005378466,0.0001645486,0.0002600825,0.001506557,0.000227682,0.0001495804,0.0003687858,0.0003746165,0.0009737103],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0005149588,"about_ca_system_score_gemma":0.0003539616,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.01302606,"about_ca_topic_score_gemma":0.01129566,"domain_scores_codex":[0.9998118,0.00001888394,0.00001958297,0.00006163739,0.0000341297,0.00005408599],"domain_scores_gemma":[0.9996459,0.00005223156,0.0001310435,0.00002587142,0.0000694109,0.00007554406],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.001057847,0.00007562072,0.7458223,0.0001495866,0.000082954,0.001840237,0.00116209,0.0006821128,0.2388996,0.0001543336,0.001522183,0.008551187],"study_design_scores_gemma":[0.000009208554,0.00009611322,0.9893599,0.00002038523,0.00002618259,0.0008337511,0.001801778,0.0001749395,0.004687666,0.00008404358,0.002889742,0.0000163114],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.992559,0.0001613159,0.0001357711,0.00009058214,0.000008826481,0.00001534378,0.00578113,0.00000925219,0.00123868],"genre_scores_gemma":[0.9887304,0.0002574333,0.0002539789,0.00009010229,0.00000641898,0.00001903414,0.009970838,0.000008369421,0.0006635125],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.01302606,"threshold_uncertainty_score":0.02590048,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.03086243809134211,"score_gpt":0.3381502161581814,"score_spread":0.3072877780668393,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}