{"id":"W4322754745","doi":"10.1038/s41467-023-36687-7","title":"Genomic attributes of Vibrio cholerae O1 responsible for 2022 massive cholera outbreak in Bangladesh","year":2023,"lang":"en","type":"article","venue":"Nature Communications","topic":"Vibrio bacteria research studies","field":"Biochemistry, Genetics and Molecular Biology","cited_by":53,"is_retracted":false,"has_abstract":true,"ca_institutions":"","funders":"Foreign, Commonwealth and Development Office; International Centre for Diarrhoeal Disease Research, Bangladesh; Wellcome Trust; Styrelsen för Internationellt Utvecklingssamarbete; National Institute of Allergy and Infectious Diseases; Global Affairs Canada; Japan Agency for Medical Research and Development; Division of Intramural Research, National Institute of Allergy and Infectious Diseases; Wellcome; National Institutes of Health; National Science Foundation","keywords":"Vibrio cholerae; Cholera; Outbreak; Serotype; Lineage (genetic); Virology; El Tor; Pandemic; Biology; Clade; Microbiology; Medicine; Coronavirus disease 2019 (COVID-19); Genetics; Gene; Phylogenetics; Bacteria; Infectious disease (medical specialty)","routes":{"ca_aff":false,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":true},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0004509003,0.0001261604,0.0001987986,0.0001981301,0.0001629704,0.00002080206,0.000937683,0.0002635493,0.000008332383],"category_scores_gemma":[0.0008582748,0.0001290671,0.0001056952,0.0004880205,0.0001645765,0.000006937354,0.001044086,0.0003794825,0.00001205673],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00004567017,"about_ca_system_score_gemma":0.0001840395,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00001593151,"about_ca_topic_score_gemma":0.0004501611,"domain_scores_codex":[0.9989484,0.0001404159,0.0002584126,0.000250676,0.0001179504,0.0002841368],"domain_scores_gemma":[0.9979955,0.000217668,0.00009791184,0.001393578,0.0002475808,0.0000477943],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.0001266852,0.00007319625,0.007312042,0.00002470723,0.00008247845,6.448583e-7,0.0001763849,0.00004492426,0.9776102,0.0008674922,0.01322479,0.0004564917],"study_design_scores_gemma":[0.001679854,0.0002334769,0.4317104,0.00005552317,0.00002356887,0.000002682317,0.0003370245,0.0004266697,0.1687486,0.000338061,0.3961413,0.0003029388],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9702759,0.01009985,0.00005919036,0.01627978,0.0001602112,0.0009975992,0.001058026,0.00004333951,0.001026043],"genre_scores_gemma":[0.9914781,0.003078215,0.002022068,0.0001957527,0.00007267033,0.0003318989,0.001725619,0.00002715386,0.001068505],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.8088616,"threshold_uncertainty_score":0.5263203,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.03086243809134211,"score_gpt":0.3381502161581814,"score_spread":0.3072877780668393,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}