{"id":"W4322757900","doi":"10.1080/17435390.2023.2180451","title":"A comprehensive proteomics analysis of the response of <i>Pseudomonas aeruginosa</i> to nanoceria cytotoxicity","year":2023,"lang":"en","type":"article","venue":"Nanotoxicology","topic":"Bacterial biofilms and quorum sensing","field":"Biochemistry, Genetics and Molecular Biology","cited_by":5,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of Ottawa","funders":"","keywords":"Pyocyanin; Pseudomonas aeruginosa; Pyoverdine; Proteomics; Biochemistry; Biology; Extracellular; Chemistry; Bacterial outer membrane; Microbiology; Cell biology; Quorum sensing; Bacteria; Virulence","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0003294788,0.0001517308,0.0004139975,0.000207573,0.00007472128,0.000006196552,0.0002893785,0.00025892,0.00001558677],"category_scores_gemma":[0.0002780446,0.0001207068,0.0002849087,0.001348272,0.0001969769,0.000002057438,0.0003551941,0.00007278728,0.000006195259],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00001651365,"about_ca_system_score_gemma":0.0001349777,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00003193517,"about_ca_topic_score_gemma":0.00007043935,"domain_scores_codex":[0.9985638,0.0003221918,0.0003742632,0.0003271492,0.0001294488,0.0002831563],"domain_scores_gemma":[0.9989035,0.00008021976,0.0002166241,0.0005505506,0.0001859108,0.00006324111],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.001361247,0.00004874638,0.002911816,0.00001417585,0.0003238686,0.000001961091,0.0001046802,0.0002872631,0.9941645,0.00005809835,0.0006422398,0.00008143723],"study_design_scores_gemma":[0.00032029,0.0003871747,0.09511755,0.000007818143,0.0001221808,0.000004009112,0.00005047179,0.00004587815,0.9006545,0.000004124154,0.003172664,0.0001133563],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9984678,0.00002058067,0.0000348107,0.00047635,0.0003008893,0.0005203891,0.0001187198,0.0000137381,0.00004670618],"genre_scores_gemma":[0.9982134,0.00001639253,0.0008028046,0.0005845969,0.00004568233,0.00002404735,0.00003766401,0.00001601454,0.0002593857],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.09350999,"threshold_uncertainty_score":0.4922282,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01585325651921493,"score_gpt":0.2665358487289003,"score_spread":0.2506825922096854,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}