{"id":"W4323043708","doi":"10.1186/s40168-023-01492-3","title":"Gut microbiome is linked to functions of peripheral immune cells in transition cows during excessive lipolysis","year":2023,"lang":"en","type":"article","venue":"Microbiome","topic":"Reproductive Physiology in Livestock","field":"Agricultural and Biological Sciences","cited_by":75,"is_retracted":false,"has_abstract":true,"ca_institutions":"Agriculture and Agri-Food Canada","funders":"Zhejiang University; National Natural Science Foundation of China","keywords":"Lipolysis; Biology; Lachnospiraceae; Microbiome; Immune system; Immunosuppression; Metagenomics; Metabolome; Immunology; Biochemistry; Metabolite; Bioinformatics; Firmicutes; Adipose tissue","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001423414,0.0001812623,0.0003185791,0.0001261556,0.0001454568,0.00002113553,0.0002578321,0.0001246269,0.0004633447],"category_scores_gemma":[0.0000102746,0.00009388962,0.0001629911,0.001920846,0.0001261569,0.0001271617,0.00009923676,0.0001270583,0.0003538258],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00006875913,"about_ca_system_score_gemma":0.00000815847,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0003713773,"about_ca_topic_score_gemma":0.00005314028,"domain_scores_codex":[0.9985723,0.00009264467,0.0003702844,0.0005217079,0.00007700135,0.000366085],"domain_scores_gemma":[0.999565,0.00004739524,0.0001046399,0.0001382897,0.00008645013,0.00005822067],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.00006203706,0.000099849,0.0001507691,0.00001993687,0.00002975951,0.000003473424,0.001304746,0.0001512704,0.9969931,0.000001221889,0.0006126469,0.0005712021],"study_design_scores_gemma":[0.0002544575,0.0003171768,0.4618844,0.00005119384,0.00001630628,0.000007889575,0.0008306899,0.000006924092,0.5350704,0.00005590426,0.001257824,0.0002468221],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9967899,0.00008339394,0.000003269216,0.00198966,0.0002666547,0.0003661186,0.0003843029,0.00007943472,0.00003726489],"genre_scores_gemma":[0.9978505,0.00001999925,0.0000820505,0.0001069977,0.0001648244,0.00004503813,0.0002075868,0.000002898505,0.001520106],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.4619226,"threshold_uncertainty_score":0.5073299,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01246211586714985,"score_gpt":0.2175524602491389,"score_spread":0.205090344381989,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}