{"id":"W4323050994","doi":"10.1093/plphys/kiad141","title":"Phylogenetic analyses of seven protein families refine the evolution of small RNA pathways in green plants","year":2023,"lang":"en","type":"article","venue":"PLANT PHYSIOLOGY","topic":"Plant Molecular Biology Research","field":"Agricultural and Biological Sciences","cited_by":31,"is_retracted":false,"has_abstract":true,"ca_institutions":"","funders":"Natural Sciences and Engineering Research Council of Canada; Rural and Environment Science and Analytical Services Division; National Institute of Food and Agriculture; National Science Foundation","keywords":"Biology; Argonaute; Genetics; Dicer; Gene; Evolutionary biology; RNA; RNA interference","routes":{"ca_aff":false,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":true},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0002903504,0.0001063168,0.000276352,0.00005784916,0.00004816813,0.000002066872,0.00038489,0.0001164397,0.00001674403],"category_scores_gemma":[0.0000750477,0.00003660801,0.00006275074,0.0005025527,0.0001757148,0.00001271369,0.0001561971,0.0001255848,0.00001837575],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00001496312,"about_ca_system_score_gemma":0.00002049122,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.003909701,"about_ca_topic_score_gemma":0.003536948,"domain_scores_codex":[0.9987656,0.0003323948,0.000256333,0.0002316613,0.0001175835,0.0002963608],"domain_scores_gemma":[0.9993896,0.0003405066,0.0001221332,0.00008820081,0.00003351589,0.00002600509],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.0001303031,0.00004123735,0.003603353,0.00001800755,0.00002500064,0.000008366943,0.00005721216,0.00007136303,0.993833,0.00008501476,0.00003344249,0.002093667],"study_design_scores_gemma":[0.0001252369,0.0003220903,0.8134971,0.00003439304,0.000005431637,0.000006032002,0.0003135747,0.0005109957,0.1835459,0.001487613,0.00006693949,0.00008467122],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9986101,0.0001935207,5.397846e-7,0.0001848444,0.00002126,0.0002374996,0.0006188774,0.00001932584,0.0001140139],"genre_scores_gemma":[0.9993102,0.0001168322,0.00001124254,0.00001513927,0.00003728291,0.00003259524,0.0004349002,8.062256e-7,0.00004098048],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.8102871,"threshold_uncertainty_score":0.5910325,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.0666775601900062,"score_gpt":0.2639298120838451,"score_spread":0.1972522518938389,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}