{"id":"W4323294521","doi":"10.1139/gen-2022-0008","title":"Pig fetal skeletal muscle development is associated with genome-wide DNA hypomethylation and corresponding alterations in transcript and microRNA expression","year":2023,"lang":"en","type":"article","venue":"Genome","topic":"Epigenetics and DNA Methylation","field":"Biochemistry, Genetics and Molecular Biology","cited_by":5,"is_retracted":false,"has_abstract":true,"ca_institutions":"","funders":"College of Engineering, Michigan State University; National Institute of Food and Agriculture; Michigan State University; U.S. Department of Agriculture","keywords":"Biology; DNA methylation; Epigenetics; Myogenesis; Differentially methylated regions; Methylation; Epigenomics; Bisulfite sequencing; Genetics; microRNA; Regulation of gene expression; Epigenetics of physical exercise; Gene expression; Genomic imprinting; Transcriptome; Gene; Molecular biology","routes":{"ca_aff":false,"ca_fund":false,"ca_venue":true,"about_ca":false,"invisible_to_affiliation_only":true},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001847211,0.0001655675,0.0001913065,0.000330483,0.0001006402,0.0001794975,0.00008536409,0.0002363081,0.001110239],"category_scores_gemma":[0.0001770212,0.0001758844,0.0001689053,0.000184019,0.0001853681,0.00008317951,0.0001910733,0.0002531405,0.000280536],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0001247016,"about_ca_system_score_gemma":0.0001162818,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0008310498,"about_ca_topic_score_gemma":0.001244645,"domain_scores_codex":[0.9998463,0.00002136544,0.00001077134,0.00006784972,0.0000324363,0.00002123977],"domain_scores_gemma":[0.9998903,0.00002433968,0.00005137945,0.000009075889,0.00001117076,0.00001363683],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0001646518,0.00001001558,0.01846086,0.0000422419,0.00001573299,0.00009394925,0.00005131397,0.00003689942,0.9757335,0.00005335697,0.00006016525,0.005277293],"study_design_scores_gemma":[0.000004994663,0.000219872,0.9270107,0.000008345354,0.00002692562,0.0007278018,0.00005016858,0.0004063599,0.06944374,0.0001158165,0.001977714,0.000007502204],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9934543,0.001452553,0.002992,0.00006434513,0.00001039208,0.000009710569,0.0006591349,0.00006073275,0.001296839],"genre_scores_gemma":[0.9946293,0.0006366227,0.001523261,0.00009291799,0.000009210855,0.0000276001,0.001316992,0.00002133654,0.001742748],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.001110239,"threshold_uncertainty_score":0.003714085,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01410344701638543,"score_gpt":0.2319852551324665,"score_spread":0.217881808116081,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}