{"id":"W4323307347","doi":"10.1101/2023.03.02.530678","title":"No isolate, no problem: Using a novel insertion sequence PCR to link rats to human shigellosis cases in an underserved urban community","year":2023,"lang":"en","type":"preprint","venue":"bioRxiv (Cold Spring Harbor Laboratory)","topic":"Escherichia coli research studies","field":"Biochemistry, Genetics and Molecular Biology","cited_by":0,"is_retracted":false,"has_abstract":true,"ca_institutions":"St. Paul's Hospital; University of British Columbia","funders":"","keywords":"Shigellosis; Shigella flexneri; Shigella; Biology; Microbiology; Genome; Insertion sequence; Genetics; Virology; Gene; Escherichia coli","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0003875428,0.0005439755,0.0002052126,0.001046298,0.0006414274,0.000507608,0.0003778169,0.0004916335,0.001404424],"category_scores_gemma":[0.001147751,0.0002337564,0.0001944007,0.0004071498,0.0005208409,0.0002645953,0.0003753851,0.0002993822,0.0002064888],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0002704846,"about_ca_system_score_gemma":0.0003822449,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.006007988,"about_ca_topic_score_gemma":0.008093653,"domain_scores_codex":[0.9995583,0.00007319286,0.0000261021,0.0001445719,0.0000901775,0.0001075981],"domain_scores_gemma":[0.9994417,0.0001085925,0.0002068672,0.00003211552,0.00009640507,0.0001143861],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0002480203,0.0001675213,0.9690658,0.00004591699,0.0000261673,0.004460307,0.0003982833,0.00007994071,0.01827461,0.00005395134,0.0001612623,0.007018098],"study_design_scores_gemma":[0.00002471563,0.001155973,0.9596782,0.00004339152,0.00009985679,0.02095972,0.002971396,0.001669524,0.01223449,0.000124037,0.001010666,0.00002812151],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9989991,0.00004496099,0.0004918023,0.00003607828,0.000005214743,0.00002580856,0.00004584685,0.00001363855,0.0003375186],"genre_scores_gemma":[0.9986237,0.00004045033,0.001060216,0.00004440401,0.000007980523,0.000009738763,0.0000673156,0.000003836547,0.0001423348],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.006007988,"threshold_uncertainty_score":0.01194608,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.1176116961586992,"score_gpt":0.3230860036936528,"score_spread":0.2054743075349535,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}