{"id":"W4323347280","doi":"10.1080/22221751.2023.2186608","title":"Characterization of neurotropic HPAI H5N1 viruses with novel genome constellations and mammalian adaptive mutations in free-living mesocarnivores in Canada","year":2023,"lang":"en","type":"article","venue":"Emerging Microbes & Infections","topic":"Influenza Virus Research Studies","field":"Medicine","cited_by":134,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of Manitoba; University of Prince Edward Island; Environment and Climate Change Canada; Government of Manitoba; Shared Health; Canadian Food Inspection Agency; University of Saskatchewan; University of Alberta; Alberta Environment and Protected Areas; Nova Scotia Department of Agriculture; University of Guelph; Agriculture Food and Rural Development","funders":"H2020 Food; Eidgenössisches Nuklearsicherheitsinspektorat; Canadian Food Inspection Agency; Canadian Network for Research and Innovation in Machining Technology, Natural Sciences and Engineering Research Council of Canada; Environment and Climate Change Canada; Agentúra Ministerstva Školstva, Vedy, Výskumu a Športu SR","keywords":"Biology; Influenza A virus subtype H5N1; Virology; Genome; Clade; Virus; Outbreak; Gene; Genetics; Phylogenetics","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":true,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001289457,0.0001426297,0.0002563708,0.0007396007,0.0001727503,0.00001464869,0.00005440816,0.00003645056,0.00004641912],"category_scores_gemma":[0.0002594885,0.0001434257,0.00002715126,0.001398165,0.0001634468,0.0001594549,0.00008966689,0.0002350386,0.000002952668],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0002906222,"about_ca_system_score_gemma":0.0006269304,"about_ca_topic_candidate":true,"about_ca_topic_consensus":true,"about_ca_topic_score_codex":0.436778,"about_ca_topic_score_gemma":0.8143306,"domain_scores_codex":[0.9988866,0.00006690093,0.0003345225,0.0002282923,0.0001735044,0.0003101702],"domain_scores_gemma":[0.9992808,0.000237137,0.00009125375,0.0001813236,0.0001486185,0.00006087569],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.00002605625,0.0001070987,0.7075326,0.0001132722,0.0000923177,0.00002647254,0.002336765,0.00480689,0.284374,0.0002654977,0.00005333358,0.0002657331],"study_design_scores_gemma":[0.0008039536,0.0001027316,0.9929233,0.0003166736,0.00004069384,0.00002741589,0.001432889,0.0008395482,0.001847772,0.00001559376,0.001510384,0.0001390366],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9977763,0.0001744516,0.0003324685,0.0005886339,0.00007808675,0.0004847969,0.0001937624,0.0000469493,0.0003245572],"genre_scores_gemma":[0.9992064,0.0002013945,0.0001999011,0.0001093772,0.00003003297,0.00006771038,0.00003642242,0.00002430193,0.0001244588],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.3775526,"threshold_uncertainty_score":0.5848732,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.03438088723152539,"score_gpt":0.2859376583097026,"score_spread":0.2515567710781772,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}