{"id":"W4323347280","doi":"10.1080/22221751.2023.2186608","title":"Characterization of neurotropic HPAI H5N1 viruses with novel genome constellations and mammalian adaptive mutations in free-living mesocarnivores in Canada","year":2023,"lang":"en","type":"article","venue":"Emerging Microbes & Infections","topic":"Influenza Virus Research Studies","field":"Medicine","cited_by":134,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of Manitoba; University of Prince Edward Island; Environment and Climate Change Canada; Government of Manitoba; Shared Health; Canadian Food Inspection Agency; University of Saskatchewan; University of Alberta; Alberta Environment and Protected Areas; Nova Scotia Department of Agriculture; University of Guelph; Agriculture Food and Rural Development","funders":"H2020 Food; Eidgenössisches Nuklearsicherheitsinspektorat; Canadian Food Inspection Agency; Canadian Network for Research and Innovation in Machining Technology, Natural Sciences and Engineering Research Council of Canada; Environment and Climate Change Canada; Agentúra Ministerstva Školstva, Vedy, Výskumu a Športu SR","keywords":"Biology; Influenza A virus subtype H5N1; Virology; Genome; Clade; Virus; Outbreak; Gene; Genetics; Phylogenetics","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":true,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001122207,0.0003171808,0.0002060703,0.001118446,0.001165682,0.0006221596,0.0003326528,0.000293501,0.0003549972],"category_scores_gemma":[0.0003267394,0.0001829706,0.0002284222,0.000729489,0.0006036173,0.0001311618,0.0003212837,0.0002205082,0.0001002534],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.002102728,"about_ca_system_score_gemma":0.001402148,"about_ca_topic_candidate":true,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.456063,"about_ca_topic_score_gemma":0.6151311,"domain_scores_codex":[0.9998122,0.000007483559,0.00001028296,0.00004235085,0.00005544714,0.00007230816],"domain_scores_gemma":[0.9997187,0.00001728937,0.00005798168,0.00001187962,0.00009445595,0.00009958371],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.0002984366,0.00003913208,0.8985091,0.00004172768,0.00005833687,0.001976325,0.001602139,0.0001497476,0.09324265,0.00006610901,0.0001218759,0.003894341],"study_design_scores_gemma":[0.00000367194,0.00006617058,0.9961378,0.00000492757,0.00001421316,0.001038339,0.0009255628,0.0001417059,0.001259716,0.00001022473,0.0003930179,0.000004614161],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9993576,0.0001344096,0.00003794095,0.000007964044,0.000001585706,0.000009118994,0.0001620605,0.000001589451,0.0002876611],"genre_scores_gemma":[0.999068,0.000148014,0.000116199,0.00002067604,0.00000244881,0.000004437776,0.0004600188,0.00000179261,0.000178371],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.543937,"threshold_uncertainty_score":0.9068168,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.03438088723152539,"score_gpt":0.2859376583097026,"score_spread":0.2515567710781772,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}