{"id":"W4323348382","doi":"10.1094/mpmi-10-22-0204-a","title":"Genomic Resources of Four <i>Colletotrichum</i> Species (<i>C. fioriniae</i>, <i>C. chrysophilum</i>, <i>C. noveboracense</i>, and <i>C. nupharicola</i>) Threatening Commercial Apple Production in the Eastern United States","year":2023,"lang":"en","type":"article","venue":"Molecular Plant-Microbe Interactions","topic":"Plant Pathogens and Fungal Diseases","field":"Biochemistry, Genetics and Molecular Biology","cited_by":7,"is_retracted":false,"has_abstract":true,"ca_institutions":"Canadian Food Inspection Agency","funders":"National Institute of Food and Agriculture; New York Farm Viability Institute; New York State Department of Agriculture and Markets","keywords":"Biology; Postharvest; Colletotrichum acutatum; Colletotrichum; Botany; Malus; Horticulture; Phylogenetic tree; Ornamental plant; Inoculation","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.0003588812,0.0003388877,0.0003221098,0.0003939052,0.0002427695,0.0001035858,0.0003605718,0.0001258163,0.00001047953],"category_scores_gemma":[0.0001123675,0.0002963047,0.0001485719,0.0008465486,0.0001542346,0.00002271062,0.0002326934,0.0002892314,0.00002072043],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00002553177,"about_ca_system_score_gemma":0.00004959522,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.000219983,"about_ca_topic_score_gemma":0.0004233498,"domain_scores_codex":[0.9979846,0.0002550399,0.0004978376,0.0005693547,0.0002420292,0.0004511061],"domain_scores_gemma":[0.9989848,0.0001139351,0.0002262564,0.000462409,0.0001196407,0.00009302282],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"not_applicable","study_design_scores_codex":[0.0003359674,0.0001839408,0.02047033,0.00006663592,0.0001034453,0.0001340601,0.000608804,0.001228378,0.9616407,0.00002637116,0.01496855,0.0002327703],"study_design_scores_gemma":[0.003230755,0.0008134568,0.1152585,0.0004864889,0.0004924176,0.001925923,0.005307354,0.001922318,0.258348,0.0001692905,0.6102269,0.001818622],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9937647,0.0007871017,0.000162651,0.000856407,0.0003024454,0.000565633,0.003174782,0.0000486166,0.0003376476],"genre_scores_gemma":[0.9931602,0.001418613,0.0001643329,0.0009453799,0.0002321252,0.0001021772,0.003428783,0.00005167521,0.0004967239],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.7032928,"threshold_uncertainty_score":0.9999489,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01940946790837098,"score_gpt":0.2365313289332865,"score_spread":0.2171218610249155,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}