{"id":"W4323353498","doi":"10.1101/2023.03.06.531419","title":"Detection and differentiation of <i>Xanthomonas translucens</i> pathovars <i>translucens</i> and <i>undulosa</i> from wheat and barley by duplex quantitative PCR","year":2023,"lang":"en","type":"preprint","venue":"bioRxiv (Cold Spring Harbor Laboratory)","topic":"Plant Pathogenic Bacteria Studies","field":"Agricultural and Biological Sciences","cited_by":1,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of Saskatchewan; Agriculture Food and Rural Development","funders":"Saskatchewan Wheat Development Commission; Ministry of Agriculture - Saskatchewan","keywords":"Biology; Pathovar; genomic DNA; Real-time polymerase chain reaction; Streak; DNA; Duplex (building); Molecular biology; Bacteria; Genetics; Pseudomonadaceae; Gene; Pseudomonas; Chemistry","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0004073424,0.0006713808,0.0004728213,0.0005053836,0.000148827,0.0005459116,0.0002993231,0.0004216889,0.001260178],"category_scores_gemma":[0.0008293249,0.0003398474,0.0003244086,0.000326423,0.0002641953,0.0003935786,0.0003229897,0.0005963569,0.0006512394],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0002779424,"about_ca_system_score_gemma":0.0002364857,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0006323068,"about_ca_topic_score_gemma":0.0008525184,"domain_scores_codex":[0.9992834,0.0001052021,0.00008038537,0.0002960202,0.0001579329,0.00007709853],"domain_scores_gemma":[0.9994061,0.0002213976,0.0001397723,0.0000550462,0.0001302284,0.00004748194],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.00003865113,0.000007664644,0.0003990777,0.00004930311,0.000002512508,0.000007232723,0.00003124845,0.00003704427,0.9980565,0.00003232566,0.00002358152,0.001314877],"study_design_scores_gemma":[0.000005661418,0.0001738731,0.005854999,0.00001209853,0.00002469711,0.00008738785,0.00007622104,0.001096307,0.9907387,0.00004809952,0.001869108,0.00001272337],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.8215175,0.001267993,0.1686634,0.0001030697,0.00009514947,0.0002491781,0.004486607,0.00119537,0.002421679],"genre_scores_gemma":[0.820782,0.001410404,0.1561258,0.0002278884,0.00004596596,0.0009144292,0.01024012,0.0003292711,0.009924124],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.001260178,"threshold_uncertainty_score":0.004215777,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.02006160954885853,"score_gpt":0.1957840661071612,"score_spread":0.1757224565583027,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}