{"id":"W4323533996","doi":"10.1128/msphere.00478-22","title":"Evidence for a Causal Role for Escherichia coli Strains Identified as Adherent-Invasive (AIEC) in Intestinal Inflammation","year":2023,"lang":"en","type":"article","venue":"mSphere","topic":"Gut microbiota and health","field":"Biochemistry, Genetics and Molecular Biology","cited_by":35,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of Alberta","funders":"National Institute of General Medical Sciences; Office of Research and Economic Development, University of Nebraska-Lincoln; National Institutes of Health; Institut National de la Santé et de la Recherche Médicale; University of Nebraska-Lincoln; McMaster University; Crohn's and Colitis Foundation; University of Pennsylvania","keywords":"Escherichia coli; Inflammation; Microbiology; Biology; Immunology; Genetics; Gene","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.000921287,0.0004399992,0.0002984938,0.0009198354,0.0002717159,0.0005105031,0.0002586106,0.0007822381,0.004493051],"category_scores_gemma":[0.001947705,0.000179323,0.0002915557,0.0005926744,0.0007951932,0.000341558,0.0005724184,0.001014398,0.000555932],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0001546633,"about_ca_system_score_gemma":0.0003337516,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0005174507,"about_ca_topic_score_gemma":0.0005833171,"domain_scores_codex":[0.9992574,0.0001446034,0.00006191093,0.0001849072,0.0002491922,0.0001019019],"domain_scores_gemma":[0.9960744,0.001165955,0.001360716,0.0003484961,0.0005440214,0.0005063686],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.00220617,0.0007130334,0.2903095,0.002103811,0.0005503754,0.003790592,0.0003022433,0.0001335807,0.6351373,0.002563717,0.002750694,0.05943915],"study_design_scores_gemma":[0.00006038104,0.001409628,0.9043227,0.0003632057,0.000443417,0.01155633,0.0006743943,0.0005719497,0.06141976,0.002636358,0.01650143,0.00004038572],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9322959,0.03565485,0.01213488,0.005065974,0.0007215613,0.0001005396,0.001553256,0.0002193133,0.01225374],"genre_scores_gemma":[0.9811713,0.01051616,0.004692558,0.001139922,0.0002142846,0.00002375281,0.0007211374,0.00002038175,0.001500495],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.004493051,"threshold_uncertainty_score":0.0150308,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.05048126553881809,"score_gpt":0.3340215877831571,"score_spread":0.283540322244339,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}