{"id":"W4323543673","doi":"10.1016/j.chom.2023.01.010","title":"A broadly distributed predicted helicase/nuclease confers phage resistance via abortive infection","year":2023,"lang":"en","type":"article","venue":"Cell Host & Microbe","topic":"Bacteriophages and microbial interactions","field":"Environmental Science","cited_by":25,"is_retracted":false,"has_abstract":false,"ca_institutions":"McMaster University","funders":"Natural Sciences and Engineering Research Council of Canada","keywords":"Biology; Nuclease; SOS response; DNA; Phage display; Phagemid; Bacteriophage; Virology; Escherichia coli; Microbiology; Molecular biology; Genetics; Gene; Antibody","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":["insufficient_payload"],"consensus_categories":["insufficient_payload"],"category_scores_codex":[0.0001010625,0.0002244373,0.000181969,0.00006256425,0.0002973427,0.00008346339,0.0001764087,0.0001144085,0.003795238],"category_scores_gemma":[0.00002593573,0.0002351342,0.0001212985,0.0007276151,0.0001972382,0.0003076981,0.0002033745,0.0002430501,0.004761002],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0002796743,"about_ca_system_score_gemma":0.00001837363,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.001075298,"about_ca_topic_score_gemma":0.0007765028,"domain_scores_codex":[0.9986046,0.00006309391,0.0002895798,0.0004737916,0.0001199061,0.0004490404],"domain_scores_gemma":[0.9992841,0.00003971264,0.0001430315,0.0003295876,0.00002876694,0.0001747349],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"not_applicable","study_design_scores_codex":[0.00005753159,0.0001284979,0.0008305117,0.00001877998,0.00001455094,0.00004668021,0.000271281,0.00004095156,0.9337626,0.000002332188,0.06438794,0.000438344],"study_design_scores_gemma":[0.0007977746,0.00008299028,0.2588592,0.00005227515,0.00006073731,0.00002373711,0.0001019287,0.0002446869,0.287387,0.00001810491,0.4519633,0.0004082106],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9911498,0.00003393736,0.001458784,0.0003187383,0.0004468042,0.0003940725,0.0008299232,0.0003681741,0.004999794],"genre_scores_gemma":[0.9898042,0.0001293464,0.0001324184,0.0003233242,0.00006274977,0.00003268577,0.0005949545,0.00003888649,0.00888142],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.6463756,"threshold_uncertainty_score":0.9971154,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.005569065631988586,"score_gpt":0.2189732663696929,"score_spread":0.2134042007377043,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}