{"id":"W4323663321","doi":"10.3390/metabo13030402","title":"Cross-Platform Comparison of Amino Acid Metabolic Profiling in Three Model Organisms Used in Environmental Metabolomics","year":2023,"lang":"en","type":"article","venue":"Metabolites","topic":"Metabolomics and Mass Spectrometry Studies","field":"Biochemistry, Genetics and Molecular Biology","cited_by":2,"is_retracted":false,"has_abstract":true,"ca_institutions":"Ministry of the Environment, Conservation and Parks; The Scarborough Hospital; University of Toronto","funders":"Krembil Foundation","keywords":"Metabolomics; Daphnia magna; Amino acid; Chemistry; Environmental chemistry; Pollutant; Liquid chromatography–mass spectrometry; Ecotoxicology; Chromatography; Computational biology; Mass spectrometry; Biochemistry; Biology; Toxicity; Organic chemistry","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.0007301192,0.0003569636,0.0009275514,0.0004588341,0.00007269531,0.00003390099,0.0003993311,0.0002198388,0.00002955137],"category_scores_gemma":[0.0001724907,0.0003379734,0.0001827853,0.0007060199,0.000187925,0.00002385598,0.0003992224,0.0002294471,0.0000205579],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00002124959,"about_ca_system_score_gemma":0.00006370911,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00003634572,"about_ca_topic_score_gemma":0.0002040277,"domain_scores_codex":[0.9975618,0.00005514036,0.0008343841,0.0006130866,0.0003028855,0.0006327765],"domain_scores_gemma":[0.9991019,0.00003427628,0.0002346404,0.0005146434,0.000032922,0.00008157792],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.00005036334,0.0001268864,0.3722851,0.00001648085,0.00006834479,0.000001439672,0.0001657395,0.001435498,0.6230733,0.002160454,0.000007515089,0.0006088669],"study_design_scores_gemma":[0.001132944,0.00004882114,0.2196539,0.000004866201,0.00004587969,0.000001216205,0.0003150805,0.006678421,0.7697532,0.001225996,0.0008592338,0.0002803885],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9842936,0.01419076,0.0005229312,0.0000277321,0.000169608,0.0003886477,0.0001716654,0.00002635906,0.0002086596],"genre_scores_gemma":[0.9919873,0.002334947,0.004968778,0.00003752716,0.00007972927,0.00007300995,0.0002820703,0.0000533466,0.0001832596],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.1526311,"threshold_uncertainty_score":0.9999073,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.03005688298576074,"score_gpt":0.2944650598218497,"score_spread":0.2644081768360889,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}