{"id":"W4323669555","doi":"10.12688/f1000research.130043.1","title":"The identification of retro-DNAs in primate genomes as DNA transposons mobilizing via retrotransposition","year":2023,"lang":"en","type":"preprint","venue":"F1000Research","topic":"Chromosomal and Genetic Variations","field":"Agricultural and Biological Sciences","cited_by":4,"is_retracted":false,"has_abstract":true,"ca_institutions":"Brock University","funders":"Ontario Ministry of Research and Innovation; Natural Sciences and Engineering Research Council of Canada; Alliance de recherche numérique du Canada; Brock University; Canada Research Chairs; Compute Canada; Canada Foundation for Innovation; Ontario Research Foundation","keywords":"Retrotransposon; Transposable element; Genome; Biology; Genetics; Computational biology; DNA; Gene","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[{"model":"gemma","categories":[],"domain":null,"study_design":"observational","genre":"empirical","about_ca_system":false,"about_ca_topic":false,"confidence":"low","status":"direct model label, unvalidated"},{"model":"gpt","categories":[],"domain":null,"study_design":"bench_or_experimental","genre":"empirical","about_ca_system":false,"about_ca_topic":false,"confidence":"low","status":"direct model label, unvalidated"}],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0002723786,0.0003638852,0.0003059962,0.001327341,0.0004984257,0.0006468364,0.0003224263,0.0003417201,0.002050446],"category_scores_gemma":[0.0007256807,0.0001639173,0.0007229414,0.002326939,0.0002643276,0.0003314489,0.0003878699,0.0003867771,0.0005693471],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0003603047,"about_ca_system_score_gemma":0.0005815274,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.001931124,"about_ca_topic_score_gemma":0.00381952,"domain_scores_codex":[0.9998203,0.00002709794,0.00001371574,0.00007031742,0.00005084607,0.00001767998],"domain_scores_gemma":[0.9997118,0.0000796731,0.00009414746,0.00002813989,0.00005015732,0.00003599514],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.001587019,0.0002683838,0.3183852,0.002026695,0.0009823403,0.002049401,0.001219923,0.01485927,0.4717357,0.006700692,0.003161588,0.1770238],"study_design_scores_gemma":[0.00009849245,0.0005413052,0.6221239,0.0004725357,0.001411143,0.008322491,0.001937433,0.1509343,0.1560652,0.008315475,0.04965433,0.00012337],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.974844,0.001977743,0.01596066,0.0001049067,0.00001975818,0.00005201954,0.003820741,0.0003546871,0.002865552],"genre_scores_gemma":[0.9381515,0.0013341,0.04826438,0.00008017166,0.00001976625,0.00005263214,0.01132523,0.0001019203,0.000670275],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.002050446,"threshold_uncertainty_score":0.006859481,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.05141695436604869,"score_gpt":0.3144873425342133,"score_spread":0.2630703881681646,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}