{"id":"W4324017996","doi":"10.1093/nar/gkad152","title":"PML and PML-like exonucleases restrict retrotransposons in jawed vertebrates","year":2023,"lang":"en","type":"article","venue":"Nucleic Acids Research","topic":"Chromosomal and Genetic Variations","field":"Agricultural and Biological Sciences","cited_by":14,"is_retracted":false,"has_abstract":true,"ca_institutions":"Université de Montréal; Dalhousie University","funders":"Natural Sciences and Engineering Research Council of Canada; College of Engineering, Michigan State University; Killam Trusts; Dalhousie University; Beatrice Hunter Cancer Research Institute; Michigan State University; National Institutes of Health; Univerza v Ljubljani; Dalhousie Medical Research Foundation; Centre National de la Recherche Scientifique; Cancer Research Institute; National Science Foundation","keywords":"Biology; Retrotransposon; Genetics; Evolutionary biology; Transposable element; Genome; Gene","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0005614822,0.0001106767,0.0001491698,0.00008648744,0.0003933369,0.0001109219,0.0002896632,0.0001243231,0.0008274098],"category_scores_gemma":[0.0002066668,0.00004982968,0.0000461323,0.002146397,0.000164626,0.0001031062,0.0001650032,0.000297878,0.0004280927],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00003289116,"about_ca_system_score_gemma":0.00002300963,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0008253679,"about_ca_topic_score_gemma":0.001722852,"domain_scores_codex":[0.9982127,0.0002124544,0.0001870665,0.0003832029,0.0004514792,0.0005531274],"domain_scores_gemma":[0.9991631,0.0004816107,0.00001356612,0.0000932938,0.00008348572,0.000164944],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.00009939,0.0002098244,0.268823,0.0000281049,0.00002055823,0.00009054859,0.0007174073,0.00001049059,0.6537645,0.001614911,0.008704942,0.06591631],"study_design_scores_gemma":[0.0002421702,0.0003005975,0.9727691,0.00003206699,0.000003085998,0.000005289878,0.000670821,0.0008483194,0.0008853667,0.002150097,0.02195635,0.0001367151],"study_design_candidate":"observational","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9923015,0.0001547862,2.027957e-7,0.00500437,0.00005678988,0.0002517823,0.00005695599,0.000102947,0.002070665],"genre_scores_gemma":[0.9982698,0.0005121049,0.00004335762,0.00006524644,0.0001226394,0.00003907067,0.00005496056,0.000002242425,0.0008905518],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.7039461,"threshold_uncertainty_score":0.9059557,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.07032936482081757,"score_gpt":0.3082288406333641,"score_spread":0.2378994758125466,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}