{"id":"W4324056395","doi":"10.3390/microorganisms11030727","title":"Comparative Genomic Analysis of Enterococci across Sectors of the One Health Continuum","year":2023,"lang":"en","type":"article","venue":"Microorganisms","topic":"Antimicrobial Resistance in Staphylococcus","field":"Medicine","cited_by":26,"is_retracted":false,"has_abstract":true,"ca_institutions":"Public Health Agency of Canada; Agriculture and Agri-Food Canada; University of Lethbridge","funders":"Beef Cattle Research Council","keywords":"Resistome; Biology; Enterococcus faecium; Antibiotic resistance; Enterococcus faecalis; Microbiology; Mobile genetic elements; Tetracycline; Enterococcus; Genetics; Antibiotics; Plasmid; Bacteria; Gene; Staphylococcus aureus","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0003197879,0.0001634055,0.001013414,0.0001932322,0.0001032824,0.000009731467,0.0002592226,0.00007284126,0.0001423894],"category_scores_gemma":[0.00003785087,0.000126627,0.000352984,0.002170984,0.0003174109,0.00002676015,0.0001607461,0.0001646078,0.00003785956],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0001335157,"about_ca_system_score_gemma":0.0001674898,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0003392418,"about_ca_topic_score_gemma":0.001441066,"domain_scores_codex":[0.9984412,0.00008549129,0.0006022091,0.0002695871,0.0002351424,0.0003663975],"domain_scores_gemma":[0.9986545,0.00008829202,0.0004612101,0.0005271999,0.0001887992,0.00008001334],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.00009123093,0.00011565,0.06800461,0.0001052104,0.001080673,0.000001815244,0.006494011,0.0000220223,0.9211153,0.00002751908,0.002873043,0.00006894291],"study_design_scores_gemma":[0.0004729609,0.00007799644,0.5215381,0.00007294892,0.0002748041,0.000001127616,0.001007302,0.00001294223,0.4759791,0.000009764269,0.0004906337,0.00006229369],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9978062,0.0001755836,0.0002028565,0.000644739,0.0001267091,0.0005017654,0.0003596382,0.00004607407,0.0001364403],"genre_scores_gemma":[0.9982332,0.00004425918,0.0002994168,0.0003233201,0.00002394672,0.000004554715,0.00005602092,0.00002422619,0.0009910791],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.4535335,"threshold_uncertainty_score":0.5163697,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.03612710749206837,"score_gpt":0.3323262479898374,"score_spread":0.296199140497769,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}