{"id":"W4324056395","doi":"10.3390/microorganisms11030727","title":"Comparative Genomic Analysis of Enterococci across Sectors of the One Health Continuum","year":2023,"lang":"en","type":"article","venue":"Microorganisms","topic":"Antimicrobial Resistance in Staphylococcus","field":"Medicine","cited_by":26,"is_retracted":false,"has_abstract":true,"ca_institutions":"Public Health Agency of Canada; Agriculture and Agri-Food Canada; University of Lethbridge","funders":"Beef Cattle Research Council","keywords":"Resistome; Biology; Enterococcus faecium; Antibiotic resistance; Enterococcus faecalis; Microbiology; Mobile genetic elements; Tetracycline; Enterococcus; Genetics; Antibiotics; Plasmid; Bacteria; Gene; Staphylococcus aureus","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001581791,0.0002837884,0.0003581436,0.001307085,0.0002364603,0.0005360346,0.0001765883,0.0002550225,0.001191944],"category_scores_gemma":[0.0006186167,0.0001356631,0.0004875592,0.001440004,0.0001969533,0.0001327142,0.0005538574,0.0003434712,0.0003499542],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0002129072,"about_ca_system_score_gemma":0.0002496682,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00246816,"about_ca_topic_score_gemma":0.002122721,"domain_scores_codex":[0.9996934,0.00003845225,0.00001953667,0.0001093083,0.00006059867,0.00007875605],"domain_scores_gemma":[0.9996107,0.00009517306,0.0001108832,0.00002612444,0.00008896555,0.00006802659],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.000834752,0.00009913313,0.02486771,0.0001502931,0.00007262411,0.0003861172,0.0005188353,0.0002184767,0.9631075,0.0001787853,0.0001520225,0.009413597],"study_design_scores_gemma":[0.00002411395,0.0006989617,0.9325363,0.00005223875,0.0001341342,0.00172107,0.001315023,0.0009991061,0.05683745,0.0001966737,0.005460644,0.00002437422],"study_design_candidate":"observational","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9930708,0.000398999,0.001185568,0.00005992613,0.000006621193,0.00002985187,0.003924772,0.00001934416,0.00130412],"genre_scores_gemma":[0.9793505,0.0005967817,0.003933142,0.0001930491,0.000009430871,0.00004831999,0.01452076,0.00003118285,0.001316805],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.00246816,"threshold_uncertainty_score":0.004907608,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.03612710749206837,"score_gpt":0.3323262479898374,"score_spread":0.296199140497769,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}