{"id":"W4324094199","doi":"10.21203/rs.3.rs-2649734/v1","title":"Neurodesk: An accessible, flexible, and portable data analysis environment for reproducible neuroimaging","year":2023,"lang":"en","type":"preprint","venue":"Research Square","topic":"Functional Brain Connectivity Studies","field":"Neuroscience","cited_by":5,"is_retracted":false,"has_abstract":false,"ca_institutions":"University Health Network","funders":"National Institute of Biomedical Imaging and Bioengineering; National Institutes of Health; Australian Research Data Commons; University of Queensland; National Imaging Facility","keywords":"Neuroimaging; Computer science; Data science; Neuroscience; Psychology","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":["metaresearch"],"consensus_categories":[],"category_scores_codex":[0.004729047,0.002039227,0.001532942,0.002356311,0.0008337013,0.003209877,0.003474907,0.001301207,0.05696382],"category_scores_gemma":[0.01268332,0.001291188,0.001317618,0.001926536,0.0009184697,0.003343148,0.005012384,0.002225952,0.02924233],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0006670843,"about_ca_system_score_gemma":0.001880878,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.002023526,"about_ca_topic_score_gemma":0.003597067,"domain_scores_codex":[0.9982135,0.0003021178,0.0002008305,0.0005032895,0.0006162475,0.0001638965],"domain_scores_gemma":[0.9931976,0.002786313,0.0002588805,0.00243258,0.00084236,0.000482283],"domain_codex":null,"domain_gemma":"reproducibility","domain_candidate":"reproducibility","domain_consensus":null,"study_design_codex":"not_applicable","study_design_gemma":"not_applicable","study_design_scores_codex":[0.004432512,0.0003801874,0.005502471,0.001635228,0.0007508313,0.001542948,0.001172956,0.008641805,0.05663091,0.02477891,0.5795339,0.3149973],"study_design_scores_gemma":[0.002536477,0.0004125801,0.01431743,0.0005204432,0.000364892,0.002366889,0.0003824665,0.1335477,0.1604502,0.13654,0.5478343,0.0007268221],"study_design_candidate":"not_applicable","study_design_consensus":"not_applicable","genre_codex":"methods","genre_gemma":"software","genre_scores_codex":[0.005179156,0.0003099654,0.5331036,0.0004407207,0.0003169664,0.0004147839,0.03184729,0.4209279,0.00745957],"genre_scores_gemma":[0.1121338,0.000845962,0.6624192,0.0008187631,0.0004124568,0.003121799,0.06672845,0.1362775,0.01724211],"genre_candidate":"software","genre_consensus":null,"teacher_disagreement_score":0.995271,"threshold_uncertainty_score":0.190563,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.5029122058810345,"score_gpt":0.4888516931796797,"score_spread":0.01406051270135478,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}