{"id":"W4324129143","doi":"10.1128/spectrum.04917-22","title":"Vibrio cholerae Alkalizes Its Environment via Citrate Metabolism to Inhibit Enteric Growth <i>In Vitro</i>","year":2023,"lang":"en","type":"article","venue":"Microbiology Spectrum","topic":"Vibrio bacteria research studies","field":"Biochemistry, Genetics and Molecular Biology","cited_by":5,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of Alberta","funders":"Canadian Institutes of Health Research; Government of Canada; National Institutes of Health; National Institute of Allergy and Infectious Diseases; Natural Sciences and Engineering Research Council of Canada; Western Michigan University","keywords":"Vibrio cholerae; Microbiology; Bacteria; Biology; Shigella flexneri; Vibrionaceae; Escherichia coli; Biochemistry","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":["metaepi_narrow","insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.0002876984,0.0003302975,0.0003951227,0.0002444088,0.00010835,0.00003048968,0.0003735853,0.000200274,0.00009658882],"category_scores_gemma":[0.00004865843,0.000317597,0.0001341678,0.0003410171,0.0001448048,0.000007439229,0.0007624374,0.0001873559,0.001236492],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00005857431,"about_ca_system_score_gemma":0.00003817317,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00006721081,"about_ca_topic_score_gemma":0.0000771712,"domain_scores_codex":[0.997665,0.0001734318,0.0003369222,0.0008006035,0.0000780672,0.0009460102],"domain_scores_gemma":[0.9993948,0.00001567454,0.00006762818,0.0003616037,0.00002337824,0.0001368701],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0001984045,0.00005660413,0.0004076053,0.00001459839,0.0001006145,0.00003006472,0.000083857,0.00001687695,0.9952978,0.00001490324,0.003615428,0.0001632309],"study_design_scores_gemma":[0.0007903287,0.0001819312,0.006402253,0.000007703346,0.00001051474,0.00003450214,0.00002922716,0.000006723592,0.8992571,0.00004884587,0.09292908,0.0003018015],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9935998,0.001036786,0.0001501303,0.003861327,0.00029108,0.0004937074,0.0002040316,0.00004777286,0.0003153898],"genre_scores_gemma":[0.9945835,0.001292047,0.0002241397,0.001190107,0.0002732821,0.0001413829,0.000567971,0.00004617242,0.001681401],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.09604073,"threshold_uncertainty_score":0.9999276,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.008330874822784278,"score_gpt":0.2281048266640716,"score_spread":0.2197739518412873,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}