{"id":"W4327950940","doi":"10.3390/microorganisms11030792","title":"Comparative Genomic Analysis of Virulent Vibrio (Listonella) anguillarum Serotypes Revealed Genetic Diversity and Genomic Signatures in the O-Antigen Biosynthesis Gene Cluster","year":2023,"lang":"en","type":"article","venue":"Microorganisms","topic":"Aquaculture disease management and microbiota","field":"Immunology and Microbiology","cited_by":15,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of Waterloo; Fisheries and Oceans Canada; Memorial University of Newfoundland","funders":"Natural Sciences and Engineering Research Council of Canada; Canada First Research Excellence Fund; Ocean Frontier Institute","keywords":"Vibrio anguillarum; Biology; Serotype; Virulence; Microbiology; Gene cluster; Genetics; Gene; Pathogen; Vibrio; Bacteria","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":true,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0003369261,0.0002684325,0.0005792155,0.000483062,0.0004537821,0.00002490794,0.0005280765,0.0001974932,0.0002869881],"category_scores_gemma":[0.00001258158,0.0002062063,0.0001940558,0.0008915211,0.0002785567,0.00003917549,0.0009269145,0.0001710696,0.0001959189],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00005622824,"about_ca_system_score_gemma":0.00002126865,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0002979281,"about_ca_topic_score_gemma":0.000418737,"domain_scores_codex":[0.9984604,0.0003001013,0.000348525,0.0004607739,0.00005450799,0.0003757293],"domain_scores_gemma":[0.9992367,0.0001201848,0.0001792866,0.0003932019,0.00004635952,0.00002425005],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.0001030155,0.00007242274,0.02651931,0.00002226567,0.001629298,0.00001376804,0.007913227,0.0002209319,0.9592838,0.00002645231,0.004104052,0.00009147375],"study_design_scores_gemma":[0.0007082412,0.00004516335,0.8248088,0.00001086283,0.001281396,0.000004818099,0.001509898,0.00003127049,0.168762,0.00003136117,0.002540051,0.0002660708],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9936226,0.005101928,0.00003943041,0.0002203118,0.0001089524,0.0005306823,0.0002297947,0.00004495282,0.0001013593],"genre_scores_gemma":[0.9980364,0.0004478344,0.0001213768,0.0004049636,0.00001659589,0.000007131107,0.0002651671,0.00001637949,0.0006840884],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.7982895,"threshold_uncertainty_score":0.8408851,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01537730948841591,"score_gpt":0.2280952711885163,"score_spread":0.2127179617001004,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}