{"id":"W4328051175","doi":"10.1139/gen-2022-0065","title":"High-density linkage maps detail sex-specific regions of suppressed recombination near fusions of polymorphic chromosomes in purebred and hybrid North American Atlantic salmon (<i>Salmo salar</i> L.)","year":2023,"lang":"en","type":"article","venue":"Genome","topic":"Genetic diversity and population structure","field":"Biochemistry, Genetics and Molecular Biology","cited_by":5,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of Guelph","funders":"Natural Sciences and Engineering Research Council of Canada; Western Canada Research Grid; Genome Atlantic; Alliance de recherche numérique du Canada; Genome Canada; Ontario Genomics; University of Guelph","keywords":"Biology; Genetics; Salmo; Purebred; Single-nucleotide polymorphism; Centromere; Recombination; SNP; Genetic linkage; Chromosome; Haplotype; Evolutionary biology; Gene mapping; Gene; Fish <Actinopterygii>; Genotype; Fishery; Crossbreed","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":true,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0002092148,0.0001612832,0.0001594492,0.0007040114,0.0002569016,0.0002176579,0.0001752066,0.0002488014,0.001984551],"category_scores_gemma":[0.0002293472,0.0001891567,0.0002636455,0.0004548517,0.0001973391,0.00008787527,0.0003900386,0.0002756258,0.0002707372],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0001741189,"about_ca_system_score_gemma":0.0001372905,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.003746454,"about_ca_topic_score_gemma":0.0110948,"domain_scores_codex":[0.9998147,0.00001747869,0.00001363561,0.00008236212,0.00003938951,0.00003253748],"domain_scores_gemma":[0.9997349,0.0000906108,0.00007870391,0.00002617647,0.0000325841,0.00003710791],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.0001346066,0.00002543119,0.01887864,0.00002863464,0.00003734807,0.0001166514,0.0002173865,0.0001377989,0.9762412,0.0001244266,0.00006743926,0.003990389],"study_design_scores_gemma":[0.00001725238,0.0001455115,0.930741,0.000008282234,0.00005735735,0.0007133318,0.0001803007,0.0007107229,0.06550923,0.0001010367,0.001803515,0.0000124625],"study_design_candidate":"observational","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9975088,0.0001149049,0.001209345,0.0000130554,0.000001831372,0.000005249535,0.0004194978,0.00002762226,0.000699705],"genre_scores_gemma":[0.9954424,0.00008455527,0.002216695,0.00002790747,0.000002357905,0.00002301294,0.00110706,0.00001968857,0.001076266],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.003746454,"threshold_uncertainty_score":0.007449269,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01064520527039425,"score_gpt":0.2024400769240642,"score_spread":0.1917948716536699,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}