{"id":"W4328142018","doi":"10.1093/evolut/qpad050","title":"First unraveling of the hidden and intricate evolutionary history of a bacterial group II intron family","year":2023,"lang":"en","type":"article","venue":"Evolution","topic":"RNA and protein synthesis mechanisms","field":"Biochemistry, Genetics and Molecular Biology","cited_by":2,"is_retracted":false,"has_abstract":true,"ca_institutions":"McGill University","funders":"Natural Sciences and Engineering Research Council of Canada; McGill University","keywords":"Biology; Intron; Horizontal gene transfer; Group II intron; Genetics; Phylogenetic tree; Enterococcus faecalis; Phylogenetics; RNA splicing; Group I catalytic intron; Evolutionary biology; Clade; Gene; RNA; Escherichia coli","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001881585,0.00007344045,0.00009840901,0.00004709352,0.00006631471,0.00000148603,0.0001162709,0.0001018397,0.00001287201],"category_scores_gemma":[0.00009571173,0.0000609175,0.00005681187,0.000092141,0.0000922969,0.000004105988,0.0001760158,0.00003649046,0.000002475968],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00006662177,"about_ca_system_score_gemma":0.00007116357,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00006050245,"about_ca_topic_score_gemma":0.00001177653,"domain_scores_codex":[0.9993915,0.0000632673,0.0001725767,0.0001579569,0.0001058726,0.000108853],"domain_scores_gemma":[0.9996024,0.00001288669,0.0001220929,0.0001979002,0.00004353286,0.00002118899],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.00008137434,0.00001772181,0.0003592379,0.00002865383,0.00001633304,1.471884e-7,0.00009300354,0.00001505405,0.9943938,0.0007035635,0.003138784,0.001152313],"study_design_scores_gemma":[0.002171205,0.001506347,0.3429002,0.0002954512,0.0001526066,0.00002410483,0.0005002978,0.002443059,0.4702233,0.009322942,0.1697768,0.0006837531],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9951699,0.002481631,0.001229063,0.0001219225,0.0005728429,0.0001632196,0.00001655278,0.00001115659,0.0002336653],"genre_scores_gemma":[0.9985858,0.0001857431,0.0004421371,0.00001219808,0.0001683108,0.00001556873,0.000029438,0.000009324518,0.0005514888],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.5241705,"threshold_uncertainty_score":0.2484144,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01063046699782838,"score_gpt":0.195430173831608,"score_spread":0.1847997068337796,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}