{"id":"W4328142018","doi":"10.1093/evolut/qpad050","title":"First unraveling of the hidden and intricate evolutionary history of a bacterial group II intron family","year":2023,"lang":"en","type":"article","venue":"Evolution","topic":"RNA and protein synthesis mechanisms","field":"Biochemistry, Genetics and Molecular Biology","cited_by":2,"is_retracted":false,"has_abstract":true,"ca_institutions":"McGill University","funders":"Natural Sciences and Engineering Research Council of Canada; McGill University","keywords":"Biology; Intron; Horizontal gene transfer; Group II intron; Genetics; Phylogenetic tree; Enterococcus faecalis; Phylogenetics; RNA splicing; Group I catalytic intron; Evolutionary biology; Clade; Gene; RNA; Escherichia coli","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0003773408,0.000340063,0.0003276902,0.0009046476,0.0005809623,0.0007796253,0.000243081,0.0005928006,0.0008536739],"category_scores_gemma":[0.0006487042,0.000172252,0.0002450277,0.0006772798,0.0007546254,0.001629339,0.0006600001,0.0008603652,0.0003712969],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0002861286,"about_ca_system_score_gemma":0.0004475453,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0004505226,"about_ca_topic_score_gemma":0.0008007098,"domain_scores_codex":[0.9998567,0.00002692386,0.000009783163,0.00005608425,0.00002366746,0.00002672634],"domain_scores_gemma":[0.9995947,0.0001033056,0.0000909127,0.00007981693,0.00005724078,0.00007399536],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.0004160586,0.000110862,0.05377721,0.0008541016,0.00009127086,0.001723071,0.002696953,0.002483273,0.7185713,0.01237047,0.0005335425,0.206372],"study_design_scores_gemma":[0.00002955596,0.001933744,0.4727117,0.001226484,0.000411934,0.01517595,0.004727166,0.01655535,0.2186989,0.02931287,0.2389722,0.0002440779],"study_design_candidate":"observational","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9508172,0.01646013,0.02615868,0.0004972256,0.00005242924,0.00002392775,0.0003548071,0.0001276694,0.00550789],"genre_scores_gemma":[0.954155,0.0119924,0.02952359,0.0002701321,0.00007954756,0.00001880151,0.0006629128,0.0000635123,0.003234252],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.0009046476,"threshold_uncertainty_score":0.002855897,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01063046699782838,"score_gpt":0.195430173831608,"score_spread":0.1847997068337796,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}