{"id":"W4353020380","doi":"10.1099/mgen.0.000958","title":"Rapid adaptations of Legionella pneumophila to the human host","year":2023,"lang":"en","type":"article","venue":"Microbial Genomics","topic":"Legionella and Acanthamoeba research","field":"Biochemistry, Genetics and Molecular Biology","cited_by":6,"is_retracted":false,"has_abstract":true,"ca_institutions":"","funders":"Fonds de recherche du Québec – Nature et technologies; Japan Society for the Promotion of Science; Carl Tryggers Stiftelse för Vetenskaplig Forskning; Science for Life Laboratory; Folkhälsomyndigheten; Vetenskapsrådet; Public Health Agency","keywords":"Legionella pneumophila; Biology; Gene; Population; Microbiology; Legionnaires' disease; Host (biology); Virology; Genetics; Bacteria","routes":{"ca_aff":false,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":true},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001991449,0.00009460693,0.00009655952,0.00006970425,0.0001874214,0.00002299716,0.0003397142,0.00007364487,0.000007465343],"category_scores_gemma":[0.00002496302,0.0000784817,0.00008817627,0.0002433087,0.00008698033,0.000001429882,0.0002312889,0.00007685242,0.0001509919],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0000138912,"about_ca_system_score_gemma":0.00008566387,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.000066288,"about_ca_topic_score_gemma":0.00009138307,"domain_scores_codex":[0.9992532,0.00003689735,0.00017205,0.000218363,0.00007876621,0.0002406979],"domain_scores_gemma":[0.9994531,0.0000110259,0.00004190462,0.0003549155,0.00007654572,0.00006250432],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.00001742312,0.00001831643,0.000082896,0.000005580103,0.00002259979,0.000001723959,0.0002286244,0.0003543647,0.9640281,0.0001057908,0.03458265,0.0005519402],"study_design_scores_gemma":[0.000218887,0.00009612177,0.002282158,0.000004870329,0.000007661692,0.000006437565,0.0001902508,0.0000222587,0.5199045,0.00002027184,0.4771334,0.0001131921],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9962561,0.000153284,0.0001041092,0.002089097,0.000145196,0.0002306561,0.00007414185,0.00001197973,0.0009354751],"genre_scores_gemma":[0.9961373,0.0003749246,0.000120863,0.0003799222,0.000389488,0.00001231992,0.0001698865,0.00002349263,0.002391799],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.4441236,"threshold_uncertainty_score":0.3200391,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.02828146836205718,"score_gpt":0.2737227721068242,"score_spread":0.245441303744767,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}