{"id":"W4353096547","doi":"10.1016/j.imu.2023.101221","title":"Molecular evolutionary model based on phylogenetic and mutation analysis of SARS-CoV-2 spike protein sequences from Asian countries: A phylogenomic approach","year":2023,"lang":"en","type":"article","venue":"Informatics in Medicine Unlocked","topic":"SARS-CoV-2 and COVID-19 Research","field":"Medicine","cited_by":3,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of Alberta","funders":"University of Hail; University of Alberta","keywords":"Phylogenetic tree; Biology; Mutation; Coronavirus; Phylogenetics; Pandemic; Genetics; Transmission (telecommunications); Evolutionary biology; Virology; Viral evolution; Computational biology; Gene; Coronavirus disease 2019 (COVID-19); Genome; Disease; Medicine; Infectious disease (medical specialty)","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0007852037,0.0002599308,0.0007579419,0.002084488,0.00006160874,0.00001497497,0.0002239546,0.0001773778,0.000004493163],"category_scores_gemma":[0.0004161027,0.0002143732,0.0001017729,0.002399626,0.0004615243,0.00008427274,0.00005814129,0.000305925,0.00001250407],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0001981635,"about_ca_system_score_gemma":0.0004506051,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0004198502,"about_ca_topic_score_gemma":0.00003325243,"domain_scores_codex":[0.9972883,0.00008185603,0.0009409828,0.0002673935,0.001054633,0.0003667638],"domain_scores_gemma":[0.9987935,0.0001865576,0.0002607651,0.0005031376,0.0002070296,0.00004895774],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"simulation_or_modeling","study_design_scores_codex":[0.002365618,0.0006955079,0.06795391,0.003549098,0.002345728,0.0003849503,0.03600709,0.09849125,0.7786793,0.001549484,0.0005116513,0.0074664],"study_design_scores_gemma":[0.00259785,0.0004335195,0.005905335,0.0003261182,0.000431602,0.000004321818,0.002177238,0.9533287,0.03353818,0.0009232103,0.0001565277,0.0001773892],"study_design_candidate":"simulation_or_modeling","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9845337,0.0001639089,0.01146753,0.0004018361,0.00002324934,0.001040782,0.00006094928,0.00005895894,0.002249066],"genre_scores_gemma":[0.98799,0.000009510183,0.004346963,0.00725364,0.00003230889,0.0001373943,0.0002050726,0.00002132323,0.000003778167],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.8548375,"threshold_uncertainty_score":0.8741887,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.04223205608326508,"score_gpt":0.3359961051315241,"score_spread":0.293764049048259,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}