{"id":"W4360600201","doi":"10.1080/19490976.2023.2190303","title":"Enterohemorrhagic <i>Escherichia coli</i> responds to gut microbiota metabolites by altering metabolism and activating stress responses","year":2023,"lang":"en","type":"article","venue":"Gut Microbes","topic":"Gut microbiota and health","field":"Biochemistry, Genetics and Molecular Biology","cited_by":10,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of Guelph; Canada's Michael Smith Genome Sciences Centre; University of British Columbia","funders":"Canadian Institutes of Health Research; Killam Trusts; Michael Smith Health Research BC; University of Alberta","keywords":"Biology; Microbiology; Gut flora; Escherichia coli; Microbial metabolism; Dysbiosis; Bacteria; Gene; Genetics; Immunology","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.000211983,0.0006138333,0.0005868574,0.000299047,0.0004141643,0.000855094,0.0001928066,0.0004177757,0.0008423605],"category_scores_gemma":[0.0002918585,0.0002091041,0.0005888517,0.0004510569,0.0002824256,0.0003366261,0.0004888775,0.0006120031,0.0005530809],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0003268568,"about_ca_system_score_gemma":0.0003817908,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.002642487,"about_ca_topic_score_gemma":0.003338111,"domain_scores_codex":[0.9996487,0.00003852569,0.00002433115,0.0001069304,0.0000998667,0.00008169521],"domain_scores_gemma":[0.9998516,0.00002325419,0.0000436326,0.00001687133,0.00004344438,0.00002130364],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.00009790521,0.00002632267,0.004189373,0.0001512023,0.00001291457,0.00005439738,0.00005139539,0.0002226416,0.9913414,0.00005359521,0.0002513336,0.003547547],"study_design_scores_gemma":[0.00001597179,0.0003693148,0.1873067,0.00009729977,0.0000904774,0.000452956,0.0007841812,0.005757517,0.7924704,0.0002526929,0.01233923,0.00006321505],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9734643,0.002082531,0.009983308,0.0004006223,0.0001068784,0.00009779118,0.00876659,0.0004642105,0.004633802],"genre_scores_gemma":[0.9588282,0.00218016,0.02023996,0.0009633471,0.00005593269,0.0001749235,0.01346502,0.0001852272,0.003907309],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.002642487,"threshold_uncertainty_score":0.005254269,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01025175082391925,"score_gpt":0.2634811080680758,"score_spread":0.2532293572441565,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}